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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:230.7 nTPM
HPA:230.7 nTPM
GTEx:141.6 nTPM
FANTOM5:188.4 Scaled Tags Per Million
Pig:11.1 nTPM
Mouse:198.0 nTPM
Allen mouse:12.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 230.7
Sample id Sample description nTPM
Amygdala
nTPM: 230.7
1987 Female, age 91, left hemisphere 238.8
2814 Male, age 76, right hemisphere 232.7
2514 Male, age 75, right hemisphere 229.1
2695 Female, age 67, right hemisphere 228.1
2517 Female, age 94, left hemisphere 224.8
Basal amygdala
nTPM: 219.4
2110 Male, age 80, left hemisphere 225.7
1955 Male, age 76, both hemispheres 224.4
2609 Male, age 75, right hemisphere 221.3
2243 Female, age 91, right hemisphere 219.8
2685 Female, age 94, left hemisphere 213.8
2827 Female, age 67, right hemisphere 211.1
Central amygdala
nTPM: 223.1
1905 Male, age 76, both hemispheres 229.5
2239 Male, age 80, left hemisphere 224.3
2515 Male, age 75, right hemisphere 223.0
2701 Female, age 91, right hemisphere 221.5
2826 Female, age 94, left hemisphere 217.3
Corticomedial amygdala
nTPM: 221.7
2242 Female, age 91, right hemisphere 225.5
2240 Male, age 76, both hemispheres 225.0
2429 Female, age 94, left hemisphere 223.7
2829 Male, age 80, left hemisphere 223.7
2428 Male, age 75, right hemisphere 222.9
2535 Female, age 67, right hemisphere 209.4
Lateral amygdala
nTPM: 220.9
1883 Male, age 76, both hemispheres 229.8
2516 Male, age 75, right hemisphere 225.2
2256 Male, age 80, left hemisphere 221.1
2255 Female, age 91, right hemisphere 218.7
2534 Female, age 94, left hemisphere 217.7
2830 Female, age 67, right hemisphere 213.0
Stria terminalis, bed nucleus
nTPM: 223.5
1974 Female, age 91, both hemispheres 224.8
2201 Male, age 74, unknown 224.4
2486 Female, age 94, both hemispheres 221.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 141.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 141.6
Samples: 152

Max nTPM: 330.3
Min nTPM: 80.7
Std nTPM: 39.8
Median nTPM: 134.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 330.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 264.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 261.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 258.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 257.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 243.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 242.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 240.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 238.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 230.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 200.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 193.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 192.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 187.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 184.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 183.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 180.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 177.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 176.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 175.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 173.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 173.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 170.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 168.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 166.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 165.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 164.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 164.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 164.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 162.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 162.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 161.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 161.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 161.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 161.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 160.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 160.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 155.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 155.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 154.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 153.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 153.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 152.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 152.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 150.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 150.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 150.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 148.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 148.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 147.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 147.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 145.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 144.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 144.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 143.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 142.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 142.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 141.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 141.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 140.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 140.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 140.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 139.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 139.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 138.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 138.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 137.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 137.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 136.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 136.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 136.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 136.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 136.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 135.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 135.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 135.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 134.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 133.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 132.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 132.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 132.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 130.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 130.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 129.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 129.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 129.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 129.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 128.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 128.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 128.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 127.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 127.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 126.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 126.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 126.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 125.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 125.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 124.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 124.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 124.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 123.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 123.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 123.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 122.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 122.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 122.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 121.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 120.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 120.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 120.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 120.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 118.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 116.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 116.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 116.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 116.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 115.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 115.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 114.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 113.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 112.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 112.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 111.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 111.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 110.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 110.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 109.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 109.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 109.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 109.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 109.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 109.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 108.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 106.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 104.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 103.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 102.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 101.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 101.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 101.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 99.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 97.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 92.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 91.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 91.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 88.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 87.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 86.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 82.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 81.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 80.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 188.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 188.4
FF:10151-102I7 76 years, female 188.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 11.1
Pig sample Sample description nTPM
Amygdala
nTPM: 11.1
Samples: 4

Max nTPM: 12.2
Min nTPM: 10.1
Sample A Female 12.2
Sample B Female 11.1
Sample C Male 11.1
Sample D Male 10.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 198.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 198.1
Samples: 4

Max nTPM: 210.1
Min nTPM: 187.5
Sample A Male 187.5
Sample B Male 196.5
Sample C Female 198.2
Sample D Female 210.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.5
74580984 Antisense, RP_060215_02_C08, Mouse strain C57BL/6J (56 days, male) 12.5

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