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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:247.0 nTPM
HPA:247.0 nTPM
GTEx:188.2 nTPM
FANTOM5:174.4 Scaled Tags Per Million
Pig:16.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 247.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 243.2
1981 Female, age 72, midline 260.7
2048 Male, age 55, midline 241.6
2816 Male, age 47, midline 239.5
2565 Male, age 75, midline 237.4
2194 Female, age 79, both hemispheres 236.6
Cervical spinal cord, dorsal horn
nTPM: 247.0
2296 Male, age 66, both hemispheres 268.3
2173 Female, age 72, unknown 259.0
2069 Male, age 47, both hemispheres 251.9
1877 Male, age 55, unknown 241.6
2721 Male, age 90, both hemispheres 231.9
2297 Male, age 75, both hemispheres 229.3
Cervical spinal cord, ventral horn
nTPM: 239.4
2098 Female, age 72, unknown 271.8
2809 Male, age 90, both hemispheres 245.1
2068 Male, age 55, unknown 234.2
2480 Male, age 75, both hemispheres 231.1
2820 Female, age 79, both hemispheres 227.6
2295 Male, age 66, both hemispheres 227.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 188.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 188.2
Samples: 159

Max nTPM: 357.4
Min nTPM: 98.6
Std nTPM: 45.1
Median nTPM: 183.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 357.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 327.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 320.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 311.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 296.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 289.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 284.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 281.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 279.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 271.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 269.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 263.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 255.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 254.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 253.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 248.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 246.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 242.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 241.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 240.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 239.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 238.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 236.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 234.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 234.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 229.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 223.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 222.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 221.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 219.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 218.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 216.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 216.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 214.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 212.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 212.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 210.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 210.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 210.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 207.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 205.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 205.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 204.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 203.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 203.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 201.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 201.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 201.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 200.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 199.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 198.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 198.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 198.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 198.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 196.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 195.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 195.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 194.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 193.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 192.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 192.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 191.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 191.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 189.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 189.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 189.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 189.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 189.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 188.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 187.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 186.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 186.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 186.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 184.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 184.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 184.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 184.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 183.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 183.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 183.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 183.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 181.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 180.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 180.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 180.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 179.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 179.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 178.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 178.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 177.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 177.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 177.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 176.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 175.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 175.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 172.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 172.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 171.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 170.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 170.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 170.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 170.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 169.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 169.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 168.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 168.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 168.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 167.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 167.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 167.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 165.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 163.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 163.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 162.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 160.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 160.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 158.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 157.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 157.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 157.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 156.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 155.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 155.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 154.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 153.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 152.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 151.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 150.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 148.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 147.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 147.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 146.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 146.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 146.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 146.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 145.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 144.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 142.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 142.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 140.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 140.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 139.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 139.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 139.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 139.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 138.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 134.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 134.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 133.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 132.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 131.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 131.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 128.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 126.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 122.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 109.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 102.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 98.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 98.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 174.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 174.4
FF:10159-103A6 76 years, female 186.7
FF:10181-103D1 60 years, female 162.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 16.3
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.7
Sample A Female 16.4
Sample B Female 16.0
Sample C Male 18.0
Sample D Male 14.7
Ventral spinal cord
nTPM: 16.7
Samples: 4

Max nTPM: 17.2
Min nTPM: 16.2
Sample A Female 16.4
Sample B Female 17.2
Sample C Male 16.2
Sample D Male 16.8

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