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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:386.4 nTPM
HPA:386.4 nTPM
FANTOM5:412.4 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:9.2 nTPM
Allen mouse:0.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 386.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 269.9
2032 Female, age 42, unknown 276.4
2497 Male, age 66, unknown 272.8
2396 Male, age 61, right hemisphere 260.7
Centromedial thalamic nucleus
nTPM: 386.4
2279 Female, age 85, left hemisphere 510.9
2401 Male, age 76, right hemisphere 261.8
Habenula
nTPM: 178.3
2252 Male, age 62, unknown 189.5
2276 Male, age 66, unknown 177.8
1957 Male, age 80, both hemispheres 173.2
2203 Male, age 61, left hemisphere 172.8
Lateral geniculate body
nTPM: 262.6
2575 Female, age 94, right hemisphere 386.1
2841 Male, age 80, both hemispheres 311.2
2659 Male, age 66, unknown 291.0
2035 Female, age 72, unknown 244.7
1953 Male, age 62, unknown 239.9
2399 Male, age 61, left hemisphere 221.1
2857 Male, age 74, right hemisphere 204.9
2106 Female, age 67, right hemisphere 201.8
Lateral thalamic nuclei
nTPM: 266.7
2765 Female, age 67, both hemispheres 313.1
2573 Female, age 94, left hemisphere 293.7
2661 Female, age 72, unknown 278.2
2577 Male, age 74, both hemispheres 263.0
1903 Male, age 76, left hemisphere 185.5
Medial dorsal thalamic nucleus
nTPM: 209.4
2660 Female, age 72, unknown 351.2
1930 Female, age 42, unknown 233.5
2576 Male, age 74, both hemispheres 231.5
1859 Male, age 76, both hemispheres 220.6
2039 Female, age 72, unknown 210.7
1971 Male, age 61, right hemisphere 199.1
1810 Male, age 48, unknown 194.1
2283 Male, age 80, right hemisphere 192.5
2402 Female, age 67, both hemispheres 189.7
2492 Male, age 75, right hemisphere 189.7
2026 Male, age 62, unknown 182.2
2498 Male, age 66, unknown 169.1
2572 Female, age 94, right hemisphere 158.0
Medial geniculate body
nTPM: 231.6
2217 Female, age 72, unknown 273.0
2571 Male, age 75, right hemisphere 263.0
2657 Male, age 74, right hemisphere 228.7
2650 Female, age 94, left hemisphere 227.0
2207 Male, age 80, right hemisphere 218.3
2049 Male, age 76, both hemispheres 216.4
1811 Female, age 42, unknown 194.6
Nucleus reuniens
nTPM: 360.9
2210 Female, age 85, left hemisphere 589.8
2205 Male, age 80, left hemisphere 285.2
2212 Female, age 67, left hemisphere 207.7
Nucleus rhomboideus
nTPM: 342.3
2280 Female, age 85, left hemisphere 595.2
2213 Female, age 67, left hemisphere 256.9
2206 Male, age 80, both hemispheres 174.7
Posterior thalamic nucleus
nTPM: 194.0
2266 Male, age 76, right hemisphere 221.4
2655 Male, age 74, right hemisphere 213.2
2495 Female, age 67, right hemisphere 181.5
2649 Female, age 94, both hemispheres 159.8
Pulvinar
nTPM: 230.9
2398 Male, age 61, left hemisphere 267.6
1899 Female, age 42, unknown 261.6
2582 Female, age 72, unknown 253.2
2214 Male, age 76, right hemisphere 238.4
2724 Male, age 74, right hemisphere 226.8
1972 Male, age 62, unknown 225.5
1929 Male, age 48, unknown 220.3
1932 Male, age 80, right hemisphere 219.2
2499 Male, age 66, unknown 210.8
2496 Female, age 67, right hemisphere 185.7
Subthalamic nucleus
nTPM: 318.6
2056 Female, age 72, unknown 442.1
2282 Male, age 61, both hemispheres 381.0
2216 Male, age 48, unknown 360.9
2779 Female, age 42, unknown 316.8
2124 Male, age 62, unknown 315.0
2275 Male, age 66, unknown 276.3
2658 Male, age 74, both hemispheres 253.9
2406 Female, age 72, unknown 202.6
Ventral posterolateral thalamic nucleus
nTPM: 250.0
2581 Female, age 72, unknown 324.4
2740 Male, age 76, right hemisphere 265.2
2578 Male, age 74, both hemispheres 260.3
2397 Male, age 61, right hemisphere 237.0
2570 Male, age 75, right hemisphere 226.5
2197 Male, age 80, both hemispheres 186.3
Ventral posteromedial thalamic nucleus
nTPM: 230.5
2127 Male, age 76, right hemisphere 286.9
2653 Male, age 74, both hemispheres 240.1
2202 Male, age 61, left hemisphere 219.4
2281 Male, age 75, right hemisphere 215.9
2758 Male, age 80, both hemispheres 190.4
Ventral thalamic nuclei
nTPM: 274.0
2652 Male, age 74, left hemisphere 357.6
2291 Female, age 72, unknown 328.0
2858 Female, age 72, unknown 294.2
2580 Male, age 66, unknown 259.9
1845 Male, age 48, unknown 254.6
1912 Female, age 42, unknown 253.5
1860 Male, age 76, both hemispheres 244.7
2204 Male, age 80, both hemispheres 237.9
2285 Male, age 62, unknown 235.8
Ventromedial nucleus
nTPM: 149.9
1982 Female, age 72, unknown 152.2
1822 Female, age 42, unknown 147.7
Zona incerta
nTPM: 311.2
2663 Female, age 72, unknown 376.0
2215 Male, age 66, unknown 373.5
2403 Male, age 62, unknown 329.8
2822 Male, age 74, right hemisphere 273.5
2208 Male, age 80, right hemisphere 203.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 412.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 412.4
FF:10154-103A1 76 years, female 412.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7.6
Pig sample Sample description nTPM
Thalamus
nTPM: 7.6
Samples: 4

Max nTPM: 12.2
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 9.2
Sample C Male 5.3
Sample D Male 12.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 9.2
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.0
Sample A Male 11.5
Sample B Male 8.0
Sample C Female 8.1
Sample D Female 9.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.0
69540733 Antisense, RP_050426_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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