MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:349.4 nTPM
HPA:349.4 nTPM
GTEx:315.9 nTPM
FANTOM5:307.8 Scaled Tags Per Million
Pig:10.0 nTPM
Mouse:10.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 349.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 292.1
1830 Male, age 51, unknown 355.1
1833 Male, age 53, unknown 329.9
2411 Female, age 72, unknown 329.1
1870 Female, age 42, unknown 298.7
2019 Male, age 18, unknown 297.7
2586 Male, age 75, left hemisphere 272.7
2666 Male, age 74, left hemisphere 270.8
2828 Female, age 72, unknown 264.3
2219 Male, age 76, both hemispheres 255.2
1827 Male, age 72, unknown 247.7
Dorsal raphe nucleus
nTPM: 243.5
2750 Male, age 76, both hemispheres 346.8
2016 Female, age 72, unknown 239.9
1828 Male, age 53, unknown 236.0
2047 Male, age 72, unknown 203.8
2298 Female, age 72, unknown 190.9
Inferior colliculus
nTPM: 241.4
2849 Male, age 72, unknown 283.7
1848 Female, age 42, unknown 239.8
1890 Male, age 53, unknown 234.6
2097 Female, age 72, unknown 207.6
Median raphe nucleus
nTPM: 224.2
2220 Male, age 76, midline 224.2
Pedunculopontine tegmental nucleus
nTPM: 270.7
2338 Male, age 61, both hemispheres 278.4
2334 Male, age 80, both hemispheres 271.0
1921 Female, age 85, both hemispheres 262.7
Periaquaductal grey, anterior
nTPM: 223.1
1947 Male, age 18, unknown 237.7
1795 Male, age 51, unknown 223.6
2502 Female, age 75, unknown 208.0
Periaquaductal grey, dorsal
nTPM: 216.5
2464 Female, age 72, unknown 290.0
1831 Male, age 72, unknown 210.8
2850 Male, age 76, both hemispheres 183.8
1840 Male, age 53, unknown 181.2
Periaquaductal grey, lateral
nTPM: 232.1
2272 Male, age 74, both hemispheres 259.9
2053 Male, age 18, unknown 240.7
2140 Male, age 76, both hemispheres 195.6
Pretectal area
nTPM: 236.1
2316 Male, age 76, right hemisphere 334.5
2407 Male, age 75, both hemispheres 293.9
1815 Male, age 53, unknown 274.6
2825 Male, age 18, unknown 251.8
1817 Female, age 42, unknown 222.5
2224 Female, age 72, unknown 216.1
2273 Male, age 74, both hemispheres 214.5
2007 Male, age 72, unknown 214.0
2667 Female, age 75, unknown 211.4
1816 Male, age 51, unknown 182.8
1944 Female, age 72, unknown 181.4
Red nucleus
nTPM: 349.4
2823 Male, age 76, right hemisphere 460.3
1904 Male, age 53, unknown 378.6
2769 Male, age 72, unknown 377.4
2588 Male, age 74, left hemisphere 376.5
1865 Male, age 51, unknown 375.0
2227 Male, age 72, unknown 373.5
2503 Female, age 72, unknown 354.0
1821 Female, age 72, unknown 338.3
2785 Male, age 18, unknown 329.6
1954 Female, age 42, unknown 286.3
2584 Male, age 75, left hemisphere 277.4
2725 Female, age 75, unknown 265.5
Substantia nigra
nTPM: 236.0
2590 Female, age 75, unknown 296.5
2583 Male, age 75, right hemisphere 286.8
2409 Female, age 72, unknown 276.3
2699 Male, age 18, unknown 246.6
1851 Male, age 51, unknown 231.9
1889 Female, age 72, unknown 228.4
1941 Male, age 53, unknown 210.1
2665 Male, age 74, both hemispheres 209.4
2241 Male, age 72, unknown 205.0
1916 Female, age 42, unknown 169.3
Superior colliculus
nTPM: 274.5
1913 Female, age 42, unknown 341.5
1995 Male, age 72, unknown 325.9
1895 Male, age 76, right hemisphere 324.5
2668 Female, age 75, unknown 309.5
1839 Male, age 51, unknown 292.1
2587 Male, age 74, left hemisphere 278.4
1796 Male, age 53, unknown 237.1
2664 Male, age 75, both hemispheres 226.9
2087 Female, age 72, unknown 208.0
2261 Male, age 18, unknown 201.2
Ventral tegmental area
nTPM: 243.4
2410 Female, age 72, unknown 282.0
2223 Female, age 72, unknown 272.5
2021 Male, age 53, unknown 248.1
1942 Male, age 51, unknown 226.7
2218 Male, age 76, both hemispheres 223.4
1915 Female, age 42, unknown 207.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 315.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 315.9
Samples: 139

Max nTPM: 1262.0
Min nTPM: 31.6
Std nTPM: 200.8
Median nTPM: 280.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1262.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1055.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 890.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 832.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 760.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 671.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 656.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 647.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 608.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 606.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 593.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 307.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 307.8
FF:10158-103A5 76 years, female 307.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.0
Pig sample Sample description nTPM
Midbrain
nTPM: 8.8
Samples: 4

Max nTPM: 10.1
Min nTPM: 5.6
Sample A Female 9.7
Sample B Female 10.1
Sample C Male 5.6
Sample D Male 9.9
Periaqueductal gray
nTPM: 7.3
Samples: 3

Max nTPM: 8.0
Min nTPM: 6.3
Sample B Female 8.0
Sample C Male 6.3
Sample D Male 7.6
Substantia nigra
nTPM: 10.1
Samples: 4

Max nTPM: 16.9
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 7.9
Sample C Male 8.2
Sample D Male 16.9
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 10.9
Min nTPM: 4.0
Sample A Female 7.3
Sample B Female 4.0
Sample C Male 8.4
Sample D Male 10.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.0
Min nTPM: 9.3
Sample A Male 9.3
Sample B Male 11.0
Sample C Female 10.7
Sample D Female 10.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69540733 Antisense, RP_050426_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.