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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:224.7 nTPM
HPA:224.7 nTPM
GTEx:403.5 nTPM
FANTOM5:129.5 Scaled Tags Per Million
Pig:9.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 224.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 207.9
2194 Female, age 79, both hemispheres 236.8
2816 Male, age 47, midline 223.4
1981 Female, age 72, midline 200.7
2048 Male, age 55, midline 195.7
2565 Male, age 75, midline 183.2
Cervical spinal cord, dorsal horn
nTPM: 216.1
2296 Male, age 66, both hemispheres 274.7
2173 Female, age 72, unknown 227.1
1877 Male, age 55, unknown 215.3
2069 Male, age 47, both hemispheres 205.7
2721 Male, age 90, both hemispheres 187.6
2297 Male, age 75, both hemispheres 186.2
Cervical spinal cord, ventral horn
nTPM: 224.7
2820 Female, age 79, both hemispheres 281.5
2068 Male, age 55, unknown 281.2
2480 Male, age 75, both hemispheres 198.6
2809 Male, age 90, both hemispheres 197.5
2295 Male, age 66, both hemispheres 197.0
2098 Female, age 72, unknown 192.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 403.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 403.5
Samples: 159

Max nTPM: 1036.9
Min nTPM: 76.5
Std nTPM: 161.0
Median nTPM: 396.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1036.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 757.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 721.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 701.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 689.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 688.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 681.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 675.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 668.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 642.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 636.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 632.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 632.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 628.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 626.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 623.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 620.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 615.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 611.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 601.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 599.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 592.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 583.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 576.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 575.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 556.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 555.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 549.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 548.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 544.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 543.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 537.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 524.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 524.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 523.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 520.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 517.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 517.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 506.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 504.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 504.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 503.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 503.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 501.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 499.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 495.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 494.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 491.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 486.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 482.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 480.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 477.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 469.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 468.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 463.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 463.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 461.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 459.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 458.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 456.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 449.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 447.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 445.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 438.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 438.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 430.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 428.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 426.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 425.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 425.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 423.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 416.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 415.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 414.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 413.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 409.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 404.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 402.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 399.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 396.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 395.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 393.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 389.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 386.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 385.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 384.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 384.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 384.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 383.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 380.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 378.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 377.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 373.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 370.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 367.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 367.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 366.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 365.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 357.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 355.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 352.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 352.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 349.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 344.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 342.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 341.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 341.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 336.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 331.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 326.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 325.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 323.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 323.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 320.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 318.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 309.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 291.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 286.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 284.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 283.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 279.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 278.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 273.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 265.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 260.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 256.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 244.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 238.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 237.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 233.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 229.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 227.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 227.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 225.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 225.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 220.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 220.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 218.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 215.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 213.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 211.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 196.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 196.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 192.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 190.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 187.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 153.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 153.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 153.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 149.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 148.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 143.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 135.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 133.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 127.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 126.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 99.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 98.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 76.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 129.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 129.5
FF:10181-103D1 60 years, female 152.6
FF:10159-103A6 76 years, female 106.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 9.4
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.7
Sample A Female 9.6
Sample B Female 8.7
Sample C Male 9.4
Sample D Male 10.0
Ventral spinal cord
nTPM: 8.9
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.2
Sample A Female 8.5
Sample B Female 8.4
Sample C Male 8.2
Sample D Male 10.5

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