MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:448.3 nTPM
HPA:448.3 nTPM
GTEx:574.4 nTPM
FANTOM5:396.5 Scaled Tags Per Million
Pig:123.4 nTPM
Mouse:623.0 nTPM
Allen mouse:11.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 448.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 408.0
2586 Male, age 75, left hemisphere 433.3
2219 Male, age 76, both hemispheres 418.8
1827 Male, age 72, unknown 417.5
2828 Female, age 72, unknown 408.9
2411 Female, age 72, unknown 406.3
1833 Male, age 53, unknown 404.5
2666 Male, age 74, left hemisphere 403.0
2019 Male, age 18, unknown 400.8
1870 Female, age 42, unknown 400.4
1830 Male, age 51, unknown 386.7
Dorsal raphe nucleus
nTPM: 423.2
2298 Female, age 72, unknown 441.8
2047 Male, age 72, unknown 437.1
1828 Male, age 53, unknown 426.9
2750 Male, age 76, both hemispheres 414.3
2016 Female, age 72, unknown 395.9
Inferior colliculus
nTPM: 406.6
2097 Female, age 72, unknown 412.9
2849 Male, age 72, unknown 412.2
1890 Male, age 53, unknown 408.9
1848 Female, age 42, unknown 392.3
Median raphe nucleus
nTPM: 446.6
2220 Male, age 76, midline 446.6
Pedunculopontine tegmental nucleus
nTPM: 419.1
2334 Male, age 80, both hemispheres 435.7
1921 Female, age 85, both hemispheres 421.0
2338 Male, age 61, both hemispheres 400.6
Periaquaductal grey, anterior
nTPM: 421.8
1795 Male, age 51, unknown 431.7
1947 Male, age 18, unknown 427.4
2502 Female, age 75, unknown 406.2
Periaquaductal grey, dorsal
nTPM: 406.8
2850 Male, age 76, both hemispheres 431.7
1840 Male, age 53, unknown 407.1
1831 Male, age 72, unknown 402.3
2464 Female, age 72, unknown 386.3
Periaquaductal grey, lateral
nTPM: 404.6
2272 Male, age 74, both hemispheres 411.9
2053 Male, age 18, unknown 401.8
2140 Male, age 76, both hemispheres 400.1
Pretectal area
nTPM: 421.7
1816 Male, age 51, unknown 448.5
1817 Female, age 42, unknown 448.3
1944 Female, age 72, unknown 442.2
2007 Male, age 72, unknown 437.3
2667 Female, age 75, unknown 431.2
1815 Male, age 53, unknown 426.6
2224 Female, age 72, unknown 416.7
2825 Male, age 18, unknown 407.9
2273 Male, age 74, both hemispheres 407.5
2316 Male, age 76, right hemisphere 386.9
2407 Male, age 75, both hemispheres 385.1
Red nucleus
nTPM: 418.1
1821 Female, age 72, unknown 448.5
2725 Female, age 75, unknown 446.2
2503 Female, age 72, unknown 424.0
1954 Female, age 42, unknown 417.1
2769 Male, age 72, unknown 415.9
1904 Male, age 53, unknown 415.5
2227 Male, age 72, unknown 414.4
2785 Male, age 18, unknown 410.8
2588 Male, age 74, left hemisphere 407.7
1865 Male, age 51, unknown 407.6
2584 Male, age 75, left hemisphere 406.5
2823 Male, age 76, right hemisphere 402.5
Substantia nigra
nTPM: 448.3
1916 Female, age 42, unknown 510.8
1851 Male, age 51, unknown 477.8
2699 Male, age 18, unknown 466.2
2665 Male, age 74, both hemispheres 456.1
1889 Female, age 72, unknown 442.8
1941 Male, age 53, unknown 431.7
2409 Female, age 72, unknown 428.0
2583 Male, age 75, right hemisphere 424.7
2241 Male, age 72, unknown 422.2
2590 Female, age 75, unknown 422.2
Superior colliculus
nTPM: 403.8
1796 Male, age 53, unknown 431.0
2261 Male, age 18, unknown 410.7
2087 Female, age 72, unknown 409.8
2587 Male, age 74, left hemisphere 406.3
2668 Female, age 75, unknown 403.4
1895 Male, age 76, right hemisphere 399.5
1839 Male, age 51, unknown 396.6
1913 Female, age 42, unknown 395.9
2664 Male, age 75, both hemispheres 395.5
1995 Male, age 72, unknown 389.2
Ventral tegmental area
nTPM: 438.7
1915 Female, age 42, unknown 467.7
2410 Female, age 72, unknown 455.7
2218 Male, age 76, both hemispheres 455.3
2223 Female, age 72, unknown 423.6
1942 Male, age 51, unknown 418.9
2021 Male, age 53, unknown 410.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 574.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 574.4
Samples: 139

Max nTPM: 1087.0
Min nTPM: 254.2
Std nTPM: 154.3
Median nTPM: 572.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1087.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 965.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 933.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 933.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 906.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 887.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 885.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 863.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 845.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 819.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 767.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 396.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 396.5
FF:10158-103A5 76 years, female 396.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 123.4
Pig sample Sample description nTPM
Midbrain
nTPM: 101.6
Samples: 4

Max nTPM: 118.0
Min nTPM: 89.8
Sample A Female 97.0
Sample B Female 89.8
Sample C Male 118.0
Sample D Male 101.5
Periaqueductal gray
nTPM: 74.2
Samples: 3

Max nTPM: 87.3
Min nTPM: 67.2
Sample B Female 68.1
Sample C Male 87.3
Sample D Male 67.2
Substantia nigra
nTPM: 104.2
Samples: 4

Max nTPM: 158.0
Min nTPM: 64.5
Sample A Female 158.0
Sample B Female 76.8
Sample C Male 117.6
Sample D Male 64.5
Superior colliculi
nTPM: 123.4
Samples: 4

Max nTPM: 161.2
Min nTPM: 97.7
Sample A Female 161.2
Sample B Female 97.7
Sample C Male 133.8
Sample D Male 100.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 623.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 623.0
Samples: 4

Max nTPM: 699.3
Min nTPM: 539.1
Sample A Male 699.3
Sample B Male 588.5
Sample C Female 539.1
Sample D Female 665.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.8
69734572 Antisense, RP_050503_01_B10, Mouse strain C57BL/6J (56 days, male) 11.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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