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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:418.2 nTPM
HPA:418.2 nTPM
GTEx:375.7 nTPM
FANTOM5:335.3 Scaled Tags Per Million
Pig:102.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 418.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 415.8
2565 Male, age 75, midline 453.1
1981 Female, age 72, midline 425.1
2194 Female, age 79, both hemispheres 417.4
2816 Male, age 47, midline 392.6
2048 Male, age 55, midline 390.7
Cervical spinal cord, dorsal horn
nTPM: 418.2
2721 Male, age 90, both hemispheres 447.0
2173 Female, age 72, unknown 427.2
2069 Male, age 47, both hemispheres 419.6
2296 Male, age 66, both hemispheres 408.6
1877 Male, age 55, unknown 404.5
2297 Male, age 75, both hemispheres 401.9
Cervical spinal cord, ventral horn
nTPM: 415.3
2295 Male, age 66, both hemispheres 430.3
2480 Male, age 75, both hemispheres 418.0
2098 Female, age 72, unknown 417.4
2809 Male, age 90, both hemispheres 416.7
2068 Male, age 55, unknown 411.4
2820 Female, age 79, both hemispheres 397.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 375.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 375.7
Samples: 159

Max nTPM: 827.0
Min nTPM: 200.5
Std nTPM: 88.8
Median nTPM: 369.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 827.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 616.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 602.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 601.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 599.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 598.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 590.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 528.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 519.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 509.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 503.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 491.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 483.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 482.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 477.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 471.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 471.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 469.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 469.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 462.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 457.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 456.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 455.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 454.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 453.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 452.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 448.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 447.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 441.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 441.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 439.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 437.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 433.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 432.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 430.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 427.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 423.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 421.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 420.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 419.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 417.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 416.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 414.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 414.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 412.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 410.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 406.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 405.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 405.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 404.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 403.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 402.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 401.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 399.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 399.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 397.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 396.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 395.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 391.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 389.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 387.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 386.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 385.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 385.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 384.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 382.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 381.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 381.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 381.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 378.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 376.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 375.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 375.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 375.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 373.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 372.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 370.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 370.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 369.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 369.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 368.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 367.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 366.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 364.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 362.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 361.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 357.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 357.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 357.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 356.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 354.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 354.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 351.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 351.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 350.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 349.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 348.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 348.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 347.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 346.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 344.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 344.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 339.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 338.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 338.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 337.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 335.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 330.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 329.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 328.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 327.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 327.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 327.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 325.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 325.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 324.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 320.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 320.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 318.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 317.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 317.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 315.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 315.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 315.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 314.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 314.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 312.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 311.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 311.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 307.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 306.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 303.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 300.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 299.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 296.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 294.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 289.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 284.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 281.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 281.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 277.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 276.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 275.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 265.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 264.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 261.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 259.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 254.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 253.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 251.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 248.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 247.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 245.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 244.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 241.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 234.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 218.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 203.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 200.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 335.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 335.3
FF:10181-103D1 60 years, female 355.3
FF:10159-103A6 76 years, female 315.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 102.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 77.9
Samples: 4

Max nTPM: 87.3
Min nTPM: 66.2
Sample A Female 87.3
Sample B Female 66.2
Sample C Male 76.8
Sample D Male 81.1
Ventral spinal cord
nTPM: 102.1
Samples: 4

Max nTPM: 114.4
Min nTPM: 78.7
Sample A Female 105.1
Sample B Female 110.0
Sample C Male 114.4
Sample D Male 78.7

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