MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:57.9 nTPM
HPA:57.9 nTPM
GTEx:70.2 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:30.5 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.9
2411 Female, age 72, unknown 59.6
1827 Male, age 72, unknown 56.8
1870 Female, age 42, unknown 56.7
2019 Male, age 18, unknown 56.6
1830 Male, age 51, unknown 54.8
1833 Male, age 53, unknown 54.6
2219 Male, age 76, both hemispheres 54.5
2586 Male, age 75, left hemisphere 53.1
2828 Female, age 72, unknown 51.9
2666 Male, age 74, left hemisphere 50.9
Dorsal raphe nucleus
nTPM: 54.8
2298 Female, age 72, unknown 58.0
2047 Male, age 72, unknown 55.8
2750 Male, age 76, both hemispheres 55.6
2016 Female, age 72, unknown 52.6
1828 Male, age 53, unknown 52.2
Inferior colliculus
nTPM: 54.3
1848 Female, age 42, unknown 55.6
2097 Female, age 72, unknown 54.7
1890 Male, age 53, unknown 54.4
2849 Male, age 72, unknown 52.5
Median raphe nucleus
nTPM: 57.9
2220 Male, age 76, midline 57.9
Pedunculopontine tegmental nucleus
nTPM: 55.4
2334 Male, age 80, both hemispheres 57.3
1921 Female, age 85, both hemispheres 55.3
2338 Male, age 61, both hemispheres 53.6
Periaquaductal grey, anterior
nTPM: 57.9
1947 Male, age 18, unknown 59.6
2502 Female, age 75, unknown 59.3
1795 Male, age 51, unknown 54.8
Periaquaductal grey, dorsal
nTPM: 51.9
1840 Male, age 53, unknown 52.6
2464 Female, age 72, unknown 52.1
1831 Male, age 72, unknown 51.4
2850 Male, age 76, both hemispheres 51.4
Periaquaductal grey, lateral
nTPM: 52.3
2272 Male, age 74, both hemispheres 53.3
2053 Male, age 18, unknown 52.5
2140 Male, age 76, both hemispheres 51.0
Pretectal area
nTPM: 55.6
2007 Male, age 72, unknown 57.9
2224 Female, age 72, unknown 57.7
2273 Male, age 74, both hemispheres 56.7
1816 Male, age 51, unknown 56.6
1815 Male, age 53, unknown 55.5
1944 Female, age 72, unknown 55.2
2825 Male, age 18, unknown 54.9
2316 Male, age 76, right hemisphere 54.8
2407 Male, age 75, both hemispheres 54.2
1817 Female, age 42, unknown 53.8
2667 Female, age 75, unknown 53.8
Red nucleus
nTPM: 55.2
1821 Female, age 72, unknown 58.2
2503 Female, age 72, unknown 57.8
1865 Male, age 51, unknown 57.4
2588 Male, age 74, left hemisphere 56.9
2725 Female, age 75, unknown 55.9
2227 Male, age 72, unknown 55.8
2769 Male, age 72, unknown 55.7
1904 Male, age 53, unknown 55.4
1954 Female, age 42, unknown 54.8
2785 Male, age 18, unknown 52.4
2823 Male, age 76, right hemisphere 51.5
2584 Male, age 75, left hemisphere 51.1
Substantia nigra
nTPM: 56.8
2409 Female, age 72, unknown 68.2
1916 Female, age 42, unknown 60.8
1851 Male, age 51, unknown 58.3
1889 Female, age 72, unknown 56.8
1941 Male, age 53, unknown 56.6
2241 Male, age 72, unknown 54.7
2590 Female, age 75, unknown 54.5
2583 Male, age 75, right hemisphere 53.5
2699 Male, age 18, unknown 53.4
2665 Male, age 74, both hemispheres 51.1
Superior colliculus
nTPM: 54.3
2261 Male, age 18, unknown 57.1
1895 Male, age 76, right hemisphere 56.8
1796 Male, age 53, unknown 56.6
2668 Female, age 75, unknown 55.4
2587 Male, age 74, left hemisphere 54.4
2087 Female, age 72, unknown 53.3
1839 Male, age 51, unknown 53.2
2664 Male, age 75, both hemispheres 52.6
1995 Male, age 72, unknown 52.0
1913 Female, age 42, unknown 51.9
Ventral tegmental area
nTPM: 56.8
2410 Female, age 72, unknown 59.8
1915 Female, age 42, unknown 57.2
2223 Female, age 72, unknown 57.2
2218 Male, age 76, both hemispheres 55.9
1942 Male, age 51, unknown 55.5
2021 Male, age 53, unknown 55.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.2
Samples: 139

Max nTPM: 136.0
Min nTPM: 20.5
Std nTPM: 22.3
Median nTPM: 65.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 136.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 134.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 129.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 124.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 120.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 117.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 117.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 114.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 110.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 109.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 106.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.1
Pig sample Sample description nTPM
Midbrain
nTPM: 49.8
Samples: 4

Max nTPM: 75.4
Min nTPM: 37.4
Sample A Female 75.4
Sample B Female 44.3
Sample C Male 37.4
Sample D Male 41.9
Periaqueductal gray
nTPM: 39.2
Samples: 3

Max nTPM: 43.1
Min nTPM: 36.6
Sample B Female 37.8
Sample C Male 43.1
Sample D Male 36.6
Substantia nigra
nTPM: 53.1
Samples: 4

Max nTPM: 72.6
Min nTPM: 44.0
Sample A Female 72.6
Sample B Female 45.8
Sample C Male 50.1
Sample D Male 44.0
Superior colliculi
nTPM: 51.6
Samples: 4

Max nTPM: 61.0
Min nTPM: 44.5
Sample A Female 61.0
Sample B Female 53.1
Sample C Male 47.7
Sample D Male 44.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.6
Samples: 4

Max nTPM: 32.1
Min nTPM: 28.1
Sample A Male 32.1
Sample B Male 30.1
Sample C Female 28.1
Sample D Female 31.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68744630 Antisense, RP_050208_01_C08, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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