MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1023.0 nTPM
HPA:1023.0 nTPM
GTEx:1272.1 nTPM
FANTOM5:96.3 Scaled Tags Per Million
Pig:80.2 nTPM
Mouse:180.4 nTPM
Allen mouse:16.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1023.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1017.1
2586 Male, age 75, left hemisphere 1114.8
2666 Male, age 74, left hemisphere 1036.6
2828 Female, age 72, unknown 1034.7
2411 Female, age 72, unknown 1029.7
2019 Male, age 18, unknown 1023.0
1830 Male, age 51, unknown 1003.8
1827 Male, age 72, unknown 1003.5
1870 Female, age 42, unknown 998.4
1833 Male, age 53, unknown 985.5
2219 Male, age 76, both hemispheres 941.0
Dorsal raphe nucleus
nTPM: 984.5
2298 Female, age 72, unknown 1006.1
2016 Female, age 72, unknown 993.9
2750 Male, age 76, both hemispheres 990.8
1828 Male, age 53, unknown 974.4
2047 Male, age 72, unknown 957.6
Inferior colliculus
nTPM: 977.6
2097 Female, age 72, unknown 1000.1
1890 Male, age 53, unknown 977.3
2849 Male, age 72, unknown 968.3
1848 Female, age 42, unknown 964.7
Median raphe nucleus
nTPM: 982.0
2220 Male, age 76, midline 982.0
Pedunculopontine tegmental nucleus
nTPM: 974.9
2338 Male, age 61, both hemispheres 1002.6
2334 Male, age 80, both hemispheres 983.5
1921 Female, age 85, both hemispheres 938.7
Periaquaductal grey, anterior
nTPM: 1019.6
2502 Female, age 75, unknown 1069.7
1795 Male, age 51, unknown 1004.7
1947 Male, age 18, unknown 984.3
Periaquaductal grey, dorsal
nTPM: 974.5
1840 Male, age 53, unknown 992.9
1831 Male, age 72, unknown 990.2
2464 Female, age 72, unknown 982.8
2850 Male, age 76, both hemispheres 931.9
Periaquaductal grey, lateral
nTPM: 983.7
2053 Male, age 18, unknown 1012.3
2272 Male, age 74, both hemispheres 972.7
2140 Male, age 76, both hemispheres 966.0
Pretectal area
nTPM: 980.9
2407 Male, age 75, both hemispheres 1021.9
2316 Male, age 76, right hemisphere 1018.4
2825 Male, age 18, unknown 996.2
1815 Male, age 53, unknown 990.4
2273 Male, age 74, both hemispheres 982.9
2007 Male, age 72, unknown 980.4
1817 Female, age 42, unknown 979.3
1816 Male, age 51, unknown 974.2
2224 Female, age 72, unknown 964.0
1944 Female, age 72, unknown 949.8
2667 Female, age 75, unknown 933.1
Red nucleus
nTPM: 1023.0
2503 Female, age 72, unknown 1080.5
2584 Male, age 75, left hemisphere 1060.7
2588 Male, age 74, left hemisphere 1050.0
1904 Male, age 53, unknown 1040.9
2227 Male, age 72, unknown 1031.0
1865 Male, age 51, unknown 1027.8
2769 Male, age 72, unknown 1020.1
2725 Female, age 75, unknown 1006.5
2785 Male, age 18, unknown 999.2
1954 Female, age 42, unknown 994.9
1821 Female, age 72, unknown 993.7
2823 Male, age 76, right hemisphere 971.1
Substantia nigra
nTPM: 1015.5
2665 Male, age 74, both hemispheres 1068.0
2590 Female, age 75, unknown 1051.8
1851 Male, age 51, unknown 1044.1
2583 Male, age 75, right hemisphere 1032.5
2699 Male, age 18, unknown 1016.3
1916 Female, age 42, unknown 1012.2
2241 Male, age 72, unknown 1000.6
2409 Female, age 72, unknown 987.9
1889 Female, age 72, unknown 974.6
1941 Male, age 53, unknown 966.4
Superior colliculus
nTPM: 1017.1
2664 Male, age 75, both hemispheres 1077.4
1995 Male, age 72, unknown 1056.0
2587 Male, age 74, left hemisphere 1044.6
1796 Male, age 53, unknown 1023.9
1913 Female, age 42, unknown 1013.7
2261 Male, age 18, unknown 1011.8
2668 Female, age 75, unknown 1005.1
1839 Male, age 51, unknown 1001.3
2087 Female, age 72, unknown 973.1
1895 Male, age 76, right hemisphere 963.9
Ventral tegmental area
nTPM: 1008.5
2021 Male, age 53, unknown 1039.3
1915 Female, age 42, unknown 1038.2
2223 Female, age 72, unknown 1022.4
1942 Male, age 51, unknown 1015.5
2410 Female, age 72, unknown 980.4
2218 Male, age 76, both hemispheres 955.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1272.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1272.1
Samples: 139

Max nTPM: 4810.2
Min nTPM: 457.3
Std nTPM: 565.8
Median nTPM: 1174.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4810.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3205.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3101.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2612.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2603.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2399.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2303.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2206.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2176.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2162.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2068.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.3
FF:10158-103A5 76 years, female 96.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.2
Pig sample Sample description nTPM
Midbrain
nTPM: 75.4
Samples: 4

Max nTPM: 126.2
Min nTPM: 50.4
Sample A Female 126.2
Sample B Female 67.7
Sample C Male 57.2
Sample D Male 50.4
Periaqueductal gray
nTPM: 56.1
Samples: 3

Max nTPM: 63.3
Min nTPM: 48.9
Sample B Female 63.3
Sample C Male 56.1
Sample D Male 48.9
Substantia nigra
nTPM: 69.5
Samples: 4

Max nTPM: 98.7
Min nTPM: 49.8
Sample A Female 98.7
Sample B Female 77.1
Sample C Male 49.8
Sample D Male 52.2
Superior colliculi
nTPM: 80.3
Samples: 4

Max nTPM: 106.0
Min nTPM: 59.1
Sample A Female 96.6
Sample B Female 106.0
Sample C Male 59.1
Sample D Male 59.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 180.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 180.4
Samples: 4

Max nTPM: 202.5
Min nTPM: 165.8
Sample A Male 202.5
Sample B Male 165.8
Sample C Female 168.9
Sample D Female 184.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.8
69028599 Antisense, RP_050316_01_F06, Mouse strain C57BL/6J (56 days, male) 16.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.