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RPL13
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1076.3 nTPM
HPA:1076.3 nTPM
FANTOM5:87.9 Scaled Tags Per Million
Pig:74.2 nTPM
Allen mouse:9.7 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 1076.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1019.8
2090 Male, age 80, both hemispheres 1067.8
2188 Female, age 91, both hemispheres 1032.7
2301 Female, age 85, both hemispheres 991.4
1984 Male, age 76, both hemispheres 987.1
Dorsal cochlear nucleus
nTPM: 1047.2
2802 Male, age 74, right hemisphere 1114.2
2187 Female, age 91, both hemispheres 1048.7
2058 Male, age 76, both hemispheres 1047.6
2378 Male, age 80, both hemispheres 1015.9
2370 Male, age 61, both hemispheres 1009.8
Dorsal tegmental nucleus
nTPM: 1003.6
2326 Male, age 74, both hemispheres 1037.6
2083 Male, age 80, both hemispheres 1020.9
1936 Male, age 76, left hemisphere 984.5
2358 Male, age 61, both hemispheres 971.5
Dorsolateral tegmental area
nTPM: 1017.0
2337 Male, age 61, both hemispheres 1068.4
2654 Male, age 80, both hemispheres 1061.0
2360 Male, age 74, both hemispheres 996.0
2141 Male, age 76, both hemispheres 980.4
2751 Female, age 85, both hemispheres 979.1
Kolliker-Fuse nucleus
nTPM: 1004.9
2315 Male, age 76, right hemisphere 1060.3
2163 Male, age 80, both hemispheres 978.9
2793 Female, age 91, left hemisphere 975.4
Lateral lemniscal nuclei
nTPM: 956.7
2746 Female, age 85, left hemisphere 1006.3
2320 Female, age 91, left hemisphere 968.0
2169 Male, age 76, both hemispheres 955.0
2453 Male, age 74, right hemisphere 942.3
2036 Male, age 80, both hemispheres 911.7
Lateral parabrachial nucleus
nTPM: 1028.3
2792 Male, age 76, both hemispheres 1054.6
2013 Male, age 80, both hemispheres 1044.8
2790 Male, age 61, both hemispheres 1010.8
2139 Female, age 85, right hemisphere 1003.2
Lateral vestibular nucleus
nTPM: 1019.7
2311 Male, age 80, both hemispheres 1071.1
2184 Male, age 76, both hemispheres 968.2
Locus coeruleus
nTPM: 972.1
2162 Male, age 80, both hemispheres 1001.9
2123 Female, age 91, both hemispheres 993.9
2317 Female, age 72, unknown 979.3
2720 Male, age 74, both hemispheres 968.1
2014 Male, age 55, unknown 967.6
1980 Male, age 76, both hemispheres 961.0
2788 Male, age 74, unknown 932.8
Medial olivary nucleus
nTPM: 1076.3
1943 Male, age 61, both hemispheres 1123.5
1962 Male, age 76, both hemispheres 1098.2
2138 Female, age 91, both hemispheres 1081.7
2851 Male, age 80, both hemispheres 1001.6
Medial parabrachial nucleus
nTPM: 1002.4
2170 Female, age 91, both hemispheres 1042.4
2463 Female, age 85, right hemisphere 1040.3
2156 Male, age 61, both hemispheres 1012.4
2786 Male, age 76, both hemispheres 970.1
2854 Male, age 80, both hemispheres 946.9
Medial periolivary nuclei
nTPM: 994.4
2081 Male, age 80, both hemispheres 1044.1
2063 Male, age 76, both hemispheres 1034.1
2458 Female, age 91, both hemispheres 986.7
2791 Male, age 74, right hemisphere 954.3
2171 Female, age 85, both hemispheres 952.6
Motor facial nucleus
nTPM: 983.6
2126 Male, age 61, both hemispheres 1055.4
2062 Male, age 76, both hemispheres 1036.7
2795 Female, age 91, both hemispheres 981.2
2365 Male, age 74, right hemisphere 960.4
2697 Female, age 85, both hemispheres 944.6
2327 Male, age 80, both hemispheres 923.5
Motor trigeminal nucleus
nTPM: 1000.9
2335 Male, age 61, both hemispheres 1023.1
2560 Male, age 74, both hemispheres 1008.0
2321 Female, age 91, both hemispheres 998.3
2309 Male, age 76, both hemispheres 992.7
2079 Male, age 80, both hemispheres 982.3
Nuclei of the trapezoid body
nTPM: 993.6
1983 Male, age 76, both hemispheres 1066.1
2735 Female, age 85, both hemispheres 988.9
2368 Female, age 91, both hemispheres 980.0
2166 Male, age 80, both hemispheres 975.6
2159 Male, age 61, both hemispheres 957.4
Paramedian reticular nucleus
nTPM: 989.4
2057 Male, age 80, both hemispheres 1028.5
2052 Male, age 76, both hemispheres 991.9
2313 Male, age 61, both hemispheres 978.1
2050 Female, age 85, both hemispheres 959.2
Pontine nuclei
nTPM: 986.3
1968 Male, age 76, left hemisphere 1027.3
2115 Male, age 80, left hemisphere 1024.5
2319 Female, age 91, both hemispheres 1003.4
2787 Female, age 85, both hemispheres 984.8
2109 Female, age 72, unknown 979.9
1863 Male, age 55, unknown 967.2
2727 Male, age 61, right hemisphere 953.1
2454 Male, age 74, left hemisphere 950.0
Pontine raphe nucleus
nTPM: 984.4
2853 Male, age 76, midline 994.1
2122 Female, age 85, midline 974.8
Posteroventral cochlear nucleus
nTPM: 1053.7
2135 Female, age 91, both hemispheres 1143.9
2341 Male, age 80, both hemispheres 1067.5
2371 Male, age 61, both hemispheres 1048.7
2752 Female, age 85, both hemispheres 1007.6
2070 Male, age 76, both hemispheres 1001.0
Principal sensory trigeminal nucleus
nTPM: 962.5
2367 Female, age 91, left hemisphere 980.3
2158 Male, age 61, both hemispheres 972.4
2008 Male, age 80, left hemisphere 952.3
2324 Male, age 76, both hemispheres 945.1
Reticular pontine nucleus, caudal
nTPM: 1013.1
2457 Female, age 91, both hemispheres 1057.0
2559 Male, age 74, both hemispheres 1027.4
2092 Male, age 76, both hemispheres 1020.0
2332 Male, age 80, right hemisphere 947.9
Reticular pontine nucleus, oral
nTPM: 966.4
1939 Male, age 80, both hemispheres 989.1
2366 Female, age 91, both hemispheres 973.0
2167 Male, age 76, both hemispheres 969.1
2361 Male, age 74, both hemispheres 953.3
2012 Female, age 85, both hemispheres 947.7
Reticulotegmental nucleus
nTPM: 997.9
2452 Male, age 74, both hemispheres 1049.1
2322 Female, age 91, both hemispheres 996.3
2333 Male, age 80, both hemispheres 986.5
2325 Male, age 76, both hemispheres 959.7
Spinal trigeminal nucleus, oral
nTPM: 985.3
2164 Male, age 80, both hemispheres 1018.6
1978 Male, age 76, both hemispheres 986.4
2737 Female, age 85, both hemispheres 950.9
Subcoeruleus area
nTPM: 994.7
2451 Male, age 74, both hemispheres 1088.7
2369 Female, age 85, left hemisphere 996.9
2089 Male, age 76, left hemisphere 973.0
2323 Female, age 91, left hemisphere 962.0
1958 Male, age 80, both hemispheres 952.9
Superior olive
nTPM: 975.2
2020 Male, age 76, both hemispheres 1034.1
2561 Female, age 91, both hemispheres 1003.8
2364 Male, age 74, right hemisphere 954.1
2329 Male, age 80, right hemisphere 946.5
1875 Female, age 85, both hemispheres 937.7
Superior vestibular nucleus
nTPM: 1025.0
2015 Male, age 80, both hemispheres 1049.6
2061 Male, age 76, both hemispheres 1045.8
2383 Male, age 74, both hemispheres 979.6
Ventral periolivary nuclei
nTPM: 975.8
2023 Male, age 76, both hemispheres 1044.5
2794 Female, age 91, left hemisphere 965.8
2165 Male, age 80, both hemispheres 956.6
2130 Female, age 85, both hemispheres 936.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 974.5
2161 Male, age 80, both hemispheres 1010.6
2456 Female, age 91, both hemispheres 1000.0
2359 Male, age 61, both hemispheres 980.5
1959 Male, age 76, both hemispheres 971.0
2449 Male, age 74, both hemispheres 962.1
2840 Female, age 85, both hemispheres 922.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 87.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 87.9
FF:10182-103D2 60 years, female 88.6
FF:10165-103B3 76 years, female 87.3
Pons
Scaled Tags Per Million: 66.9
FF:10033-101E6 18-54 years, mixed 66.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 74.2
Pig sample Sample description nTPM
Pons
nTPM: 74.2
Samples: 4

Max nTPM: 84.3
Min nTPM: 63.4
Sample A Female 71.7
Sample B Female 63.4
Sample C Male 84.3
Sample D Male 77.4

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 9.7
69028599 Antisense, RP_050316_01_F06, Mouse strain C57BL/6J (56 days, male) 9.7

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