Expression of RPL13 in colorectal cancer

RECTUM ADENOCARCINOMA (READ) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 334.82

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average FPKM

333.4

Number of samples

159

Samples

Sample	Description	FPKM
TCGA-DC-6155-01A	31 years, female, white, stage:iiia, alive, 425 days	994.5
TCGA-AG-3605-01A	85 years, female, stage:iv, alive, 30 days	928.3
TCGA-AG-3885-01A	71 years, female, stage:iiib, alive, 546 days	915.4
TCGA-AG-3727-01A	78 years, female, stage:iii, alive, 30 days	846.9
TCGA-AG-A02G-01A	66 years, male, stage:iv, dead, 1185 days	828.8
TCGA-AG-3882-01A	66 years, female, stage:i, alive, 608 days	812.1
TCGA-AG-3999-01A	61 years, female, stage:iiic, alive, 853 days	799.0
TCGA-AG-3881-01A	83 years, female, stage:iia, alive, 579 days	731.1
TCGA-AG-3909-01A	69 years, female, stage:iiib, alive, 608 days	671.5
TCGA-AG-3728-01A	73 years, male, stage:iiib, alive, 912 days	659.6
TCGA-AG-A014-01A	86 years, male, stage:i, alive, 485 days	649.4
TCGA-AG-3611-01A	72 years, male, stage:iia, alive, 424 days	645.0
TCGA-AG-3608-01A	79 years, female, stage:iia, alive, 485 days	643.1
TCGA-AG-3887-01A	68 years, male, stage:iia, alive, 1124 days	610.3
TCGA-AG-A032-01A	68 years, male, stage:iiib, alive, 1157 days	595.0
TCGA-AG-3574-01A	89 years, female, stage:ii, dead, 1096 days	587.1
TCGA-DY-A1DG-01A	75 years, male, white, stage:iva, dead, 1566 days	584.1
TCGA-AG-A016-01A	55 years, male, stage:iv, alive, 276 days	579.2
TCGA-AG-3581-01A	63 years, male, stage:i, alive, 215 days	575.9
TCGA-AF-4110-01A	77 years, male, white, stage:iva, alive, 912 days	573.0
TCGA-AG-A01N-01A	68 years, female, stage:iv, alive, 943 days	565.3
TCGA-AG-3583-01A	66 years, male, stage:iv, dead, 610 days	557.7
TCGA-AG-A00Y-01A	68 years, male, stage:iia, alive, 700 days	546.3
TCGA-AF-2691-01A	48 years, female, white, stage:i, alive, 1309 days	544.0
TCGA-AG-3883-01A	69 years, male, stage:i, alive, 31 days	540.9
TCGA-AG-A023-01A	62 years, female, stage:iv, dead, 1581 days	540.4
TCGA-AG-3894-01A	65 years, male, stage:iia, alive, 426 days	540.3
TCGA-AG-3609-01A	65 years, female, stage:iiic, alive, 608 days	535.3
TCGA-AG-3896-01A	85 years, female, stage:i, alive, 31 days	526.8
TCGA-AG-3612-01A	55 years, female, stage:iiib, alive, 608 days	526.6
TCGA-AG-A02X-01A	77 years, male, stage:i, alive, 1247 days	513.4
TCGA-AG-A015-01A	64 years, female, stage:i, alive, 1096 days	496.7
TCGA-AG-3598-01A	69 years, male, stage:iia, alive, 1522 days	492.3
TCGA-AG-4007-01A	87 years, male, stage:iv, alive, 31 days	491.9
TCGA-AG-A025-01A	62 years, female, stage:i, alive, 1520 days	481.0
TCGA-AG-3878-01A	64 years, male, stage:i, alive, 30 days	480.4
TCGA-DY-A1H8-01A	77 years, female, white, stage:iiia, dead, 992 days	476.1
TCGA-AG-A00C-01A	49 years, female, stage:iiib, alive, 183 days	473.4
TCGA-AG-A011-01A	80 years, male, stage:iia, alive, 1126 days	463.4
TCGA-DY-A1DD-01A	77 years, female, white, stage:iiib, dead, 1741 days	461.5
TCGA-AG-3587-01A	65 years, male, stage:i, alive, 1400 days	430.1
TCGA-AG-3890-01A	62 years, male, stage:i, alive, 518 days	424.6
TCGA-F5-6863-01A	71 years, female, white, stage:iiib, dead, 361 days	412.7
TCGA-AG-A008-01A	50 years, female, stage:i, alive, 424 days	384.5
TCGA-DY-A0XA-01A	57 years, female, white, stage:iia, alive, 3846 days	381.5
TCGA-AG-3892-01A	57 years, female, stage:i, alive, 396 days	378.2
TCGA-AG-A00H-01A	75 years, male, stage:iia, alive, 790 days	366.5
TCGA-DY-A1DF-01A	73 years, female, white, stage:iiic, dead, 734 days	365.4
TCGA-AG-3893-01A	74 years, male, stage:iiib, alive, 1065 days	364.9
TCGA-AG-4008-01A	63 years, male, stage:iia, alive, 518 days	361.0
TCGA-AG-3599-01A	70 years, male, stage:i, alive, 366 days	359.6
TCGA-DC-6154-01A	57 years, female, white, stage:iva, alive, 365 days	359.2
TCGA-AG-3582-01A	75 years, male, stage:iv, dead, 1096 days	353.0
TCGA-AG-A026-01A	66 years, male, stage:ii, dead, 59 days	347.0
TCGA-AF-6136-01A	72 years, female, white, stage:iiib, alive, 741 days	346.2
TCGA-DC-4745-01A	49 years, female, white, stage:iiib, alive, 639 days	345.9
TCGA-AG-3726-01A	63 years, female, stage:i, alive, 243 days	344.1
TCGA-AF-3913-01A	60 years, male, black or african american, stage:iv, dead, 316 days	341.7
TCGA-AG-4005-01A	64 years, male, stage:iv, alive, 427 days	338.4
TCGA-F5-6813-01A	70 years, male, white, stage:iiic, dead, 598 days	337.4
TCGA-AG-3594-01A	77 years, male, stage:iia, dead, 61 days	337.0
TCGA-AG-3600-01A	62 years, male, stage:iiic, alive, 184 days	332.6
TCGA-AG-4001-01A	74 years, female, stage:iia, alive, 1096 days	326.0
TCGA-AF-3400-01A	54 years, male, white, stage:iia, alive, 1049 days	314.5
TCGA-AG-3586-01A	72 years, female, stage:iii, alive, 31 days	312.6
TCGA-CL-5918-01A	90 years, female, white, stage:iia, alive, 218 days	311.6
TCGA-EF-5830-01A	54 years, male, white, stage:iib, alive, 106 days	310.6
TCGA-AG-3591-01A	66 years, female, stage:iia, alive, 1035 days	305.7
TCGA-AG-3898-01A	61 years, male, stage:iia, alive, 1461 days	305.4
TCGA-AG-3580-01A	67 years, male, stage:i, alive, 244 days	304.8
TCGA-BM-6198-01A	73 years, male, white, stage:iiib, alive, 646 days	301.0
TCGA-AG-3584-01A	60 years, male, stage:iv, dead, 730 days	300.1
TCGA-AF-3911-01A	48 years, male, white, stage:iiic, alive, 1148 days	295.2
TCGA-AG-3902-01A	61 years, male, stage:iia, alive, 974 days	290.0
TCGA-AG-A01J-01A	59 years, female, stage:iia, alive, 31 days	287.1
TCGA-EI-6509-01A	53 years, male, white, stage:iiic, alive, 517 days	284.6
TCGA-AG-3575-01A	51 years, male, stage:ii, alive, 365 days	283.0
TCGA-G5-6572-01A	56 years, male, white, dead, 1432 days	275.7
TCGA-DC-4749-01A	57 years, male, white, stage:i, alive, 762 days	274.4
TCGA-DC-5337-01A	69 years, male, white, stage:i, alive, 792 days	269.3
TCGA-AF-6672-01A	43 years, male, white, stage:iv, alive, 748 days	259.5
TCGA-AG-A020-01A	57 years, female, stage:iii, alive, 31 days	254.7
TCGA-F5-6861-01A	60 years, female, white, stage:iia, alive, 1160 days	248.4
TCGA-F5-6571-01A	62 years, female, white, stage:iia, alive, 1288 days	246.7
TCGA-DC-5869-01A	62 years, female, black or african american, stage:iiib, alive, 943 days	246.5
TCGA-DC-6681-01A	70 years, female, white, stage:iva, alive, 790 days	246.1
TCGA-AG-3901-01A	67 years, female, stage:iiib, alive, 761 days	244.9
TCGA-DY-A1DE-01A	56 years, female, white, stage:iia, alive, 3932 days	244.7
TCGA-EI-6514-01A	59 years, female, white, stage:iia, alive, 496 days	244.1
TCGA-AH-6544-01A	60 years, male, white, alive, 1173 days	243.5
TCGA-AF-A56L-01A	48 years, female, black or african american, stage:iiic, alive, 2007 days	243.1
TCGA-AG-A02N-01A	67 years, male, stage:ii, alive, 1885 days	242.6
TCGA-AG-3593-01A	72 years, female, stage:iia, alive, 1035 days	239.7
TCGA-DT-5265-01A	51 years, male, asian, stage:ii, alive, 384 days	238.9
TCGA-F5-6812-01A	67 years, male, white, stage:iia, alive, 1110 days	235.1
TCGA-DY-A1DC-01A	72 years, female, white, stage:iia, dead, 1258 days	233.9
TCGA-EI-7002-01A	58 years, male, white, stage:iv, alive, 364 days	232.2
TCGA-AH-6903-01A	46 years, male, white, stage:iiib, alive, 592 days	230.1
TCGA-G5-6641-01A	67 years, male, white, stage:iiia, alive, 804 days	229.6
TCGA-AF-2690-01A	77 years, female, white, stage:iiic, dead, 524 days	228.6
TCGA-EI-6881-01A	60 years, male, white, stage:iiia, alive, 499 days	228.5
TCGA-EI-6917-01A	33 years, male, white, stage:iiia, alive, 531 days	228.1
TCGA-AG-4022-01A	59 years, female, stage:ii, alive, 1400 days	227.9
TCGA-F5-6864-01A	74 years, female, white, stage:iiib, alive, 379 days	227.7
TCGA-AF-5654-01A	73 years, female, white, stage:i, dead, 512 days	225.6
TCGA-EI-6507-01A	60 years, male, white, stage:iia, alive, 607 days	218.7
TCGA-CI-6622-01A	74 years, male, white, stage:iib, alive, 1362 days	217.6
TCGA-AG-A036-01A	71 years, male, stage:iii, alive, 3562 days	216.8
TCGA-EI-6883-01A	63 years, male, white, stage:iic, alive, 350 days	214.5
TCGA-AF-A56K-01A	56 years, male, black or african american, stage:iia, alive, 2635 days	211.1
TCGA-F5-6465-01A	64 years, female, white, stage:iia, alive, 1506 days	208.7
TCGA-EI-6510-01A	77 years, female, white, alive, 556 days	208.0
TCGA-DC-6683-01A	43 years, male, white, stage:iiib, alive, 762 days	205.3
TCGA-AF-2692-01A	54 years, female, white, stage:iia, alive, 412 days	204.7
TCGA-EI-6512-01A	64 years, female, white, stage:iiib, alive, 538 days	204.4
TCGA-AG-3592-01A	68 years, male, stage:iia, alive, 1035 days	203.4
TCGA-AF-6655-01A	66 years, male, white, stage:iiia, alive, 609 days	203.3
TCGA-CL-4957-01A	79 years, female, dead, 425 days	203.0
TCGA-CI-6623-01B	44 years, male, white, stage:i, alive, 1443 days	202.0
TCGA-AF-2693-01A	75 years, male, white, stage:i, alive, 1155 days	200.0
TCGA-G5-6233-01A	74 years, male, white, dead, 556 days	198.6
TCGA-AG-3742-01A	85 years, female, stage:i, alive, 30 days	198.0
TCGA-AH-6643-01A	50 years, male, white, stage:iiic, dead, 1314 days	196.8
TCGA-CL-5917-01A	71 years, female, white, stage:iiic, alive, 2376 days	195.3
TCGA-EI-6884-01A	71 years, male, white, stage:iiia, alive, 328 days	192.5
TCGA-AF-A56N-01A	47 years, female, black or african american, stage:iia, alive, 360 days	191.5
TCGA-CI-6619-01B	41 years, male, white, stage:iv, alive, 184 days	191.4
TCGA-EI-6513-01A	59 years, male, white, stage:iiib, alive, 497 days	188.6
TCGA-EI-6885-01A	57 years, female, white, stage:iv, alive, 415 days	187.9
TCGA-DC-6682-01A	57 years, male, white, stage:iia, alive, 762 days	183.8
TCGA-CI-6620-01A	41 years, female, white, stage:iva, alive, 1009 days	183.8
TCGA-F5-6814-01A	57 years, male, white, stage:iia, alive, 1131 days	180.3
TCGA-DC-6157-01A	48 years, male, black or african american, stage:i, alive, 1581 days	180.1
TCGA-AH-6897-01A	48 years, male, white, stage:i, alive, 804 days	179.0
TCGA-G5-6235-01A	72 years, male, white, stage:iiib, alive, 1696 days	174.8
TCGA-AG-3578-01A	76 years, female, stage:iia, alive, 974 days	171.5
TCGA-EI-6511-01A	52 years, male, white, stage:iiib, alive, 482 days	167.8
TCGA-AF-2687-01A	57 years, male, white, stage:iiic, alive, 1427 days	166.4
TCGA-EI-6508-01A	48 years, female, white, stage:iiib, alive, 636 days	163.4
TCGA-EI-7004-01A	37 years, female, white, alive, 257 days	163.1
TCGA-EF-5831-01A	72 years, male, white, stage:iia, alive, 127 days	156.5
TCGA-CI-6621-01A	63 years, male, white, stage:iiib, alive, 419 days	156.1
TCGA-F5-6702-01A	71 years, male, white, stage:iva, alive, 869 days	149.4
TCGA-F5-6464-01A	77 years, female, white, stage:iiic, dead, 303 days	144.0
TCGA-AG-3731-01A	65 years, male, stage:iv, alive, 1126 days	141.3
TCGA-AG-3725-01A	90 years, female, stage:iii, alive, 638 days	140.1
TCGA-DC-6160-01A	68 years, male, white, stage:i, alive, 1339 days	139.3
TCGA-AG-4021-01A	84 years, female, stage:iv, dead, 121 days	132.2
TCGA-AG-A002-01A	35 years, male, stage:i, alive, 638 days	130.6
TCGA-AG-3732-01A	78 years, female, stage:i, alive, 1003 days	127.0
TCGA-AH-6547-01A	79 years, female, white, dead, 76 days	121.4
TCGA-EI-6506-01A	78 years, female, white, stage:iia, alive, 625 days	118.3
TCGA-EI-6882-01A	59 years, male, white, stage:iia, alive, 262 days	112.4
TCGA-AH-6549-01A	66 years, male, white, alive, 532 days	112.2
TCGA-AH-6644-01A	73 years, male, white, alive, 838 days	112.0
TCGA-CI-6624-01C	53 years, female, white, stage:i, alive, 1466 days	110.7
TCGA-F5-6811-01A	72 years, female, white, stage:iia, alive, 979 days	109.8
TCGA-DC-6158-01A	70 years, male, white, stage:i, dead, 334 days	107.4
TCGA-DC-6156-01A	62 years, male, white, stage:iva, alive, 943 days	104.0
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