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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:771.8 nTPM
HPA:771.8 nTPM
GTEx:757.7 nTPM
FANTOM5:647.7 Scaled Tags Per Million
Pig:349.3 nTPM
Mouse:700.7 nTPM
Allen mouse:24.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 771.8
Sample id Sample description nTPM
Amygdala
nTPM: 742.9
2695 Female, age 67, right hemisphere 783.8
2514 Male, age 75, right hemisphere 749.6
2814 Male, age 76, right hemisphere 744.3
2517 Female, age 94, left hemisphere 722.0
1987 Female, age 91, left hemisphere 715.0
Basal amygdala
nTPM: 737.2
2827 Female, age 67, right hemisphere 770.6
2609 Male, age 75, right hemisphere 754.0
2243 Female, age 91, right hemisphere 741.1
2110 Male, age 80, left hemisphere 737.2
2685 Female, age 94, left hemisphere 724.6
1955 Male, age 76, both hemispheres 695.7
Central amygdala
nTPM: 755.3
2826 Female, age 94, left hemisphere 845.6
2515 Male, age 75, right hemisphere 777.0
2239 Male, age 80, left hemisphere 746.2
1905 Male, age 76, both hemispheres 722.7
2701 Female, age 91, right hemisphere 685.1
Corticomedial amygdala
nTPM: 731.3
2428 Male, age 75, right hemisphere 782.3
2535 Female, age 67, right hemisphere 778.3
2829 Male, age 80, left hemisphere 741.0
2242 Female, age 91, right hemisphere 731.5
2429 Female, age 94, left hemisphere 694.1
2240 Male, age 76, both hemispheres 660.6
Lateral amygdala
nTPM: 771.8
2534 Female, age 94, left hemisphere 836.9
2830 Female, age 67, right hemisphere 789.1
2256 Male, age 80, left hemisphere 777.8
2516 Male, age 75, right hemisphere 758.8
2255 Female, age 91, right hemisphere 754.3
1883 Male, age 76, both hemispheres 713.7
Stria terminalis, bed nucleus
nTPM: 698.7
1974 Female, age 91, both hemispheres 705.0
2201 Male, age 74, unknown 697.4
2486 Female, age 94, both hemispheres 693.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 757.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 757.7
Samples: 152

Max nTPM: 1975.3
Min nTPM: 366.4
Std nTPM: 219.5
Median nTPM: 721.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1975.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1276.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1269.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1236.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1229.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1224.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1194.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1193.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1130.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1092.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1090.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1050.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1049.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1046.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1045.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1040.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1039.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1034.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1031.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1006.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 981.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 979.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 978.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 956.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 950.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 945.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 928.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 916.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 914.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 912.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 908.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 900.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 900.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 889.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 889.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 882.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 874.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 867.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 862.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 855.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 854.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 844.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 843.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 837.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 833.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 826.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 825.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 824.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 819.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 819.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 816.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 811.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 803.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 803.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 799.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 796.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 790.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 789.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 787.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 786.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 781.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 781.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 768.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 765.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 753.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 753.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 744.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 741.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 740.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 739.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 736.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 732.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 729.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 727.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 725.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 722.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 720.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 718.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 718.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 716.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 713.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 711.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 703.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 699.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 696.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 693.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 687.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 679.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 678.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 676.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 676.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 673.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 669.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 666.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 663.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 663.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 657.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 656.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 656.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 655.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 653.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 651.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 648.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 648.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 642.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 640.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 640.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 638.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 636.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 633.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 632.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 626.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 626.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 625.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 624.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 619.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 617.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 615.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 607.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 604.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 592.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 591.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 591.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 582.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 582.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 581.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 580.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 576.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 572.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 564.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 551.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 550.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 542.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 532.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 531.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 529.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 518.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 509.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 491.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 484.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 481.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 480.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 480.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 461.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 449.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 439.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 437.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 428.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 406.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 402.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 385.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 366.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 647.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 647.7
FF:10151-102I7 76 years, female 647.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 349.3
Pig sample Sample description nTPM
Amygdala
nTPM: 349.3
Samples: 4

Max nTPM: 420.2
Min nTPM: 282.3
Sample A Female 420.2
Sample B Female 329.8
Sample C Male 364.8
Sample D Male 282.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 700.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 700.7
Samples: 4

Max nTPM: 808.3
Min nTPM: 660.6
Sample A Male 660.6
Sample B Male 663.7
Sample C Female 808.3
Sample D Female 670.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.8
308055136 Antisense, RP_140710_01_A05, Mouse strain C57BL/6J (56 days, male) 30.3
67936204 Antisense, RP_041102_01_B02, Mouse strain C57BL/6J (56 days, male) 19.3

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