MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:769.6 nTPM
HPA:769.6 nTPM
GTEx:608.3 nTPM
FANTOM5:651.4 Scaled Tags Per Million
Pig:483.1 nTPM
Mouse:590.9 nTPM
Allen mouse:22.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 769.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 743.0
2586 Male, age 75, left hemisphere 823.4
2828 Female, age 72, unknown 766.5
2666 Male, age 74, left hemisphere 761.0
1827 Male, age 72, unknown 735.3
2219 Male, age 76, both hemispheres 735.1
2411 Female, age 72, unknown 729.7
1870 Female, age 42, unknown 726.5
2019 Male, age 18, unknown 721.9
1833 Male, age 53, unknown 719.5
1830 Male, age 51, unknown 711.0
Dorsal raphe nucleus
nTPM: 716.1
2750 Male, age 76, both hemispheres 724.6
2016 Female, age 72, unknown 719.3
1828 Male, age 53, unknown 715.0
2298 Female, age 72, unknown 710.8
2047 Male, age 72, unknown 710.5
Inferior colliculus
nTPM: 726.6
1848 Female, age 42, unknown 751.7
2849 Male, age 72, unknown 723.1
1890 Male, age 53, unknown 721.8
2097 Female, age 72, unknown 709.7
Median raphe nucleus
nTPM: 698.3
2220 Male, age 76, midline 698.3
Pedunculopontine tegmental nucleus
nTPM: 718.8
2334 Male, age 80, both hemispheres 732.1
2338 Male, age 61, both hemispheres 722.1
1921 Female, age 85, both hemispheres 702.3
Periaquaductal grey, anterior
nTPM: 769.6
2502 Female, age 75, unknown 806.9
1947 Male, age 18, unknown 754.5
1795 Male, age 51, unknown 747.3
Periaquaductal grey, dorsal
nTPM: 689.1
1840 Male, age 53, unknown 720.8
2464 Female, age 72, unknown 706.2
1831 Male, age 72, unknown 686.1
2850 Male, age 76, both hemispheres 643.4
Periaquaductal grey, lateral
nTPM: 687.6
2272 Male, age 74, both hemispheres 709.8
2053 Male, age 18, unknown 709.6
2140 Male, age 76, both hemispheres 643.4
Pretectal area
nTPM: 715.7
1816 Male, age 51, unknown 750.7
1817 Female, age 42, unknown 745.6
2007 Male, age 72, unknown 741.6
1944 Female, age 72, unknown 728.3
1815 Male, age 53, unknown 719.1
2825 Male, age 18, unknown 715.1
2407 Male, age 75, both hemispheres 714.7
2667 Female, age 75, unknown 712.9
2224 Female, age 72, unknown 686.4
2273 Male, age 74, both hemispheres 683.6
2316 Male, age 76, right hemisphere 675.2
Red nucleus
nTPM: 741.4
2584 Male, age 75, left hemisphere 785.9
2503 Female, age 72, unknown 777.3
2769 Male, age 72, unknown 751.8
2227 Male, age 72, unknown 751.3
2588 Male, age 74, left hemisphere 748.6
1821 Female, age 72, unknown 744.4
1865 Male, age 51, unknown 742.8
1904 Male, age 53, unknown 736.3
2785 Male, age 18, unknown 735.2
1954 Female, age 42, unknown 726.5
2725 Female, age 75, unknown 701.6
2823 Male, age 76, right hemisphere 695.0
Substantia nigra
nTPM: 759.7
1916 Female, age 42, unknown 827.6
2665 Male, age 74, both hemispheres 796.2
1851 Male, age 51, unknown 791.3
2590 Female, age 75, unknown 763.4
2583 Male, age 75, right hemisphere 754.5
1941 Male, age 53, unknown 749.3
2241 Male, age 72, unknown 749.0
2699 Male, age 18, unknown 748.1
1889 Female, age 72, unknown 730.0
2409 Female, age 72, unknown 687.3
Superior colliculus
nTPM: 739.1
2664 Male, age 75, both hemispheres 787.7
1796 Male, age 53, unknown 764.8
2261 Male, age 18, unknown 757.9
2668 Female, age 75, unknown 742.8
2087 Female, age 72, unknown 741.1
2587 Male, age 74, left hemisphere 738.2
1839 Male, age 51, unknown 727.0
1913 Female, age 42, unknown 718.9
1995 Male, age 72, unknown 714.3
1895 Male, age 76, right hemisphere 698.5
Ventral tegmental area
nTPM: 745.6
2410 Female, age 72, unknown 770.3
1915 Female, age 42, unknown 757.5
2223 Female, age 72, unknown 746.4
2218 Male, age 76, both hemispheres 742.3
1942 Male, age 51, unknown 738.8
2021 Male, age 53, unknown 718.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 608.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 608.3
Samples: 139

Max nTPM: 1263.1
Min nTPM: 284.5
Std nTPM: 133.6
Median nTPM: 602.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1263.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1074.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 973.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 912.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 859.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 849.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 838.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 817.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 786.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 777.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 776.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 651.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 651.4
FF:10158-103A5 76 years, female 651.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 483.1
Pig sample Sample description nTPM
Midbrain
nTPM: 435.6
Samples: 4

Max nTPM: 492.2
Min nTPM: 374.1
Sample A Female 492.2
Sample B Female 374.1
Sample C Male 477.2
Sample D Male 398.8
Periaqueductal gray
nTPM: 313.8
Samples: 3

Max nTPM: 339.9
Min nTPM: 263.0
Sample B Female 338.4
Sample C Male 339.9
Sample D Male 263.0
Substantia nigra
nTPM: 400.4
Samples: 4

Max nTPM: 467.8
Min nTPM: 354.1
Sample A Female 467.8
Sample B Female 371.1
Sample C Male 408.4
Sample D Male 354.1
Superior colliculi
nTPM: 483.1
Samples: 4

Max nTPM: 513.1
Min nTPM: 452.6
Sample A Female 513.1
Sample B Female 498.1
Sample C Male 468.7
Sample D Male 452.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 590.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 590.9
Samples: 4

Max nTPM: 663.9
Min nTPM: 551.0
Sample A Male 663.9
Sample B Male 551.0
Sample C Female 555.5
Sample D Female 593.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.9
308055136 Antisense, RP_140710_01_A05, Mouse strain C57BL/6J (56 days, male) 25.2
67936204 Antisense, RP_041102_01_B02, Mouse strain C57BL/6J (56 days, male) 20.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.