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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:758.3 nTPM
HPA:758.3 nTPM
GTEx:571.3 nTPM
FANTOM5:598.7 Scaled Tags Per Million
Pig:432.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 758.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 707.3
2565 Male, age 75, midline 757.2
2194 Female, age 79, both hemispheres 733.2
1981 Female, age 72, midline 698.3
2816 Male, age 47, midline 688.5
2048 Male, age 55, midline 659.3
Cervical spinal cord, dorsal horn
nTPM: 700.9
2296 Male, age 66, both hemispheres 762.6
2173 Female, age 72, unknown 727.4
2069 Male, age 47, both hemispheres 712.4
1877 Male, age 55, unknown 690.3
2721 Male, age 90, both hemispheres 662.0
2297 Male, age 75, both hemispheres 650.6
Cervical spinal cord, ventral horn
nTPM: 758.3
2480 Male, age 75, both hemispheres 819.8
2809 Male, age 90, both hemispheres 798.7
2068 Male, age 55, unknown 759.9
2820 Female, age 79, both hemispheres 742.4
2295 Male, age 66, both hemispheres 729.1
2098 Female, age 72, unknown 699.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 571.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 571.3
Samples: 159

Max nTPM: 856.3
Min nTPM: 376.4
Std nTPM: 104.4
Median nTPM: 556.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 856.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 851.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 850.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 846.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 826.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 782.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 774.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 772.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 765.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 758.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 741.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 741.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 734.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 726.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 721.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 718.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 716.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 699.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 699.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 699.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 698.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 693.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 692.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 685.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 680.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 680.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 680.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 678.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 670.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 664.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 662.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 658.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 655.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 650.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 649.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 649.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 647.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 646.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 642.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 636.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 629.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 624.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 624.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 621.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 621.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 619.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 613.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 612.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 611.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 608.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 607.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 605.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 604.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 601.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 600.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 593.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 592.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 592.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 590.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 588.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 587.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 586.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 586.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 584.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 579.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 576.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 576.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 575.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 575.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 575.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 574.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 571.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 570.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 565.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 564.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 564.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 563.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 561.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 559.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 556.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 554.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 550.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 548.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 547.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 546.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 544.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 543.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 543.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 543.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 543.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 542.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 542.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 537.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 537.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 535.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 535.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 533.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 531.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 527.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 527.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 524.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 522.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 520.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 519.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 518.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 518.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 518.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 516.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 515.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 514.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 514.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 513.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 512.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 509.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 506.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 506.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 505.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 502.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 502.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 501.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 501.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 500.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 494.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 492.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 486.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 482.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 479.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 479.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 476.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 476.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 475.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 474.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 471.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 471.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 471.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 471.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 469.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 468.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 467.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 465.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 465.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 459.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 453.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 449.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 440.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 436.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 434.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 433.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 420.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 412.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 410.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 409.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 407.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 399.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 397.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 393.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 386.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 376.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 376.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 598.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 598.7
FF:10159-103A6 76 years, female 648.3
FF:10181-103D1 60 years, female 549.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 432.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 432.2
Samples: 4

Max nTPM: 573.4
Min nTPM: 359.8
Sample A Female 359.8
Sample B Female 393.6
Sample C Male 573.4
Sample D Male 402.0
Ventral spinal cord
nTPM: 423.7
Samples: 4

Max nTPM: 494.4
Min nTPM: 374.3
Sample A Female 374.3
Sample B Female 436.2
Sample C Male 494.4
Sample D Male 389.9

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