BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:135.8 nTPM
HPA:135.8 nTPM
GTEx:51.8 nTPM
FANTOM5:263.9 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:22.2 nTPM
Allen mouse:1.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 135.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.3
2288 Male, age 75, left hemisphere 77.8
2846 Female, age 79, unknown 63.0
1781 Male, age 74, unknown 60.5
2481 Female, age 94, left hemisphere 58.5
1854 Male, age 80, left hemisphere 57.3
2290 Female, age 72, unknown 55.3
1857 Female, age 85, left hemisphere 51.5
2289 Male, age 61, right hemisphere 50.8
Claustrum
nTPM: 77.9
2292 Female, age 85, both hemispheres 100.1
1956 Male, age 74, unknown 95.0
2392 Female, age 94, both hemispheres 82.7
2196 Female, age 79, unknown 80.9
2198 Male, age 80, both hemispheres 76.2
2491 Male, age 75, both hemispheres 69.7
2568 Male, age 61, both hemispheres 68.1
2284 Female, age 91, both hemispheres 67.0
2645 Female, age 72, unknown 61.6
Globus pallidus, externus
nTPM: 116.8
1996 Male, age 80, right hemisphere 146.8
2772 Female, age 79, unknown 124.7
2395 Male, age 75, both hemispheres 108.9
2646 Male, age 61, right hemisphere 107.4
2567 Female, age 72, unknown 96.2
Globus pallidus, internus
nTPM: 135.8
2111 Female, age 85, right hemisphere 185.9
2778 Female, age 91, both hemispheres 155.6
2287 Male, age 75, right hemisphere 151.9
2037 Male, age 80, right hemisphere 138.4
1818 Male, age 74, unknown 124.6
2566 Female, age 72, unknown 121.7
2483 Female, age 94, right hemisphere 72.3
Nucleus accumbens
nTPM: 73.0
2391 Female, age 94, left hemisphere 125.2
2698 Female, age 72, unknown 82.2
2732 Male, age 80, right hemisphere 77.5
2286 Male, age 75, left hemisphere 70.1
1806 Female, age 85, left hemisphere 61.0
1783 Male, age 74, unknown 59.4
2824 Male, age 61, right hemisphere 58.2
1856 Female, age 91, right hemisphere 50.2
Nucleus basalis of Meynert
nTPM: 75.4
2569 Male, age 61, both hemispheres 89.9
2821 Male, age 75, both hemispheres 85.3
2393 Male, age 80, right hemisphere 65.0
2484 Female, age 94, left hemisphere 61.4
Nucleus of the diagonal band
nTPM: 50.7
1812 Female, age 91, both hemispheres 65.2
1979 Male, age 74, unknown 50.4
2029 Male, age 61, right hemisphere 47.9
2195 Female, age 85, both hemispheres 45.8
2775 Male, age 80, right hemisphere 44.3
Olfactory tubercle
nTPM: 50.0
2856 Male, age 75, right hemisphere 52.0
1998 Female, age 91, both hemispheres 50.6
1846 Male, age 80, right hemisphere 49.2
2487 Female, age 94, left hemisphere 48.3
Putamen
nTPM: 63.4
2482 Female, age 94, left hemisphere 72.5
1829 Male, age 74, unknown 72.1
2647 Male, age 75, left hemisphere 65.7
1937 Female, age 91, right hemisphere 64.4
2489 Female, age 72, unknown 62.8
2466 Female, age 79, unknown 57.3
1838 Male, age 80, right hemisphere 48.7
Septal nuclei
nTPM: 58.4
2394 Male, age 61, left hemisphere 85.8
2629 Female, age 94, right hemisphere 62.9
2199 Male, age 80, right hemisphere 58.8
2059 Female, age 85, both hemispheres 53.5
2009 Female, age 91, both hemispheres 51.3
2031 Female, age 72, unknown 50.9
1960 Male, age 74, unknown 45.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.1
Samples: 246

Max nTPM: 144.2
Min nTPM: 4.5
Std nTPM: 23.2
Median nTPM: 26.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 144.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 139.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 131.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 119.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 109.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 107.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 100.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 94.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 85.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 77.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 72.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.6
Samples: 246

Max nTPM: 286.8
Min nTPM: 1.3
Std nTPM: 30.7
Median nTPM: 15.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 286.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 184.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 164.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 158.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 122.3
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 121.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 120.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 105.7
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 89.9
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 88.5
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 79.1
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Brain - Putamen (basal ganglia)
Average nTPM: 51.8
Samples: 205

Max nTPM: 406.5
Min nTPM: 7.0
Std nTPM: 37.8
Median nTPM: 44.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 406.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 211.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 137.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 126.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 123.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 123.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 122.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 121.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 114.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 111.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 105.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 263.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.5
FF:10164-103B2 76 years, female 25.5
Globus pallidus
Scaled Tags Per Million: 263.9
FF:10175-103C4 60 years, female 295.2
FF:10161-103A8 76 years, female 232.7
Nucleus accumbens
Scaled Tags Per Million: 126.1
FF:10037-101F1 23-56 years, mixed 126.1
Putamen
Scaled Tags Per Million: 43.8
FF:10176-103C5 60 years, female 43.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.9
Pig sample Sample description nTPM
Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.7
Putamen
nTPM: 15.9
Samples: 4

Max nTPM: 32.5
Min nTPM: 3.1
Sample A Female 18.8
Sample B Female 3.1
Sample C Male 9.2
Sample D Male 32.5
Septum
nTPM: 4.9
Samples: 4

Max nTPM: 6.9
Min nTPM: 3.3
Sample A Female 3.6
Sample B Female 3.3
Sample C Male 6.9
Sample D Male 5.6
Ventral pallidum
nTPM: 11.4
Samples: 4

Max nTPM: 25.2
Min nTPM: 1.0
Sample A Female 1.0
Sample B Female 6.0
Sample C Male 25.2
Sample D Male 13.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.2
Samples: 4

Max nTPM: 28.4
Min nTPM: 15.7
Sample A Male 28.4
Sample B Male 21.8
Sample C Female 22.9
Sample D Female 15.7
Septum
nTPM: 9.8
Samples: 4

Max nTPM: 11.5
Min nTPM: 6.0
Sample A Male 6.0
Sample B Male 11.1
Sample C Female 11.5
Sample D Female 10.5
Ventral forebrain
nTPM: 12.1
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.5
Sample A Male 12.9
Sample B Male 10.5
Sample C Female 12.0
Sample D Female 13.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
70565129 Antisense, RP_050623_04_C08, Mouse strain C57BL/6J (56 days, male) 1.6
74988616 Antisense, RP_060315_05_F09, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.6
70565129 Antisense, RP_050623_04_C08, Mouse strain C57BL/6J (56 days, male) 2.3
74988616 Antisense, RP_060315_05_F09, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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