MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:130.8 nTPM
HPA:130.8 nTPM
GTEx:153.3 nTPM
FANTOM5:426.1 Scaled Tags Per Million
Pig:146.1 nTPM
Mouse:57.0 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 130.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.1
2411 Female, age 72, unknown 124.7
2019 Male, age 18, unknown 123.1
1870 Female, age 42, unknown 122.2
1830 Male, age 51, unknown 121.4
1833 Male, age 53, unknown 115.5
2828 Female, age 72, unknown 96.5
2219 Male, age 76, both hemispheres 80.7
2666 Male, age 74, left hemisphere 78.6
1827 Male, age 72, unknown 75.6
2586 Male, age 75, left hemisphere 62.9
Dorsal raphe nucleus
nTPM: 84.0
2750 Male, age 76, both hemispheres 133.0
1828 Male, age 53, unknown 84.0
2016 Female, age 72, unknown 77.2
2047 Male, age 72, unknown 66.9
2298 Female, age 72, unknown 58.9
Inferior colliculus
nTPM: 75.9
1890 Male, age 53, unknown 85.3
1848 Female, age 42, unknown 77.9
2849 Male, age 72, unknown 73.9
2097 Female, age 72, unknown 66.7
Median raphe nucleus
nTPM: 87.0
2220 Male, age 76, midline 87.0
Pedunculopontine tegmental nucleus
nTPM: 103.1
2338 Male, age 61, both hemispheres 114.9
2334 Male, age 80, both hemispheres 105.2
1921 Female, age 85, both hemispheres 89.3
Periaquaductal grey, anterior
nTPM: 60.8
1947 Male, age 18, unknown 65.6
1795 Male, age 51, unknown 58.9
2502 Female, age 75, unknown 57.8
Periaquaductal grey, dorsal
nTPM: 60.5
2464 Female, age 72, unknown 73.7
1831 Male, age 72, unknown 66.0
2850 Male, age 76, both hemispheres 51.9
1840 Male, age 53, unknown 50.3
Periaquaductal grey, lateral
nTPM: 64.5
2272 Male, age 74, both hemispheres 74.1
2053 Male, age 18, unknown 67.7
2140 Male, age 76, both hemispheres 51.8
Pretectal area
nTPM: 70.7
1815 Male, age 53, unknown 83.6
2407 Male, age 75, both hemispheres 80.3
2316 Male, age 76, right hemisphere 80.1
1817 Female, age 42, unknown 76.1
2007 Male, age 72, unknown 74.4
2273 Male, age 74, both hemispheres 72.1
2825 Male, age 18, unknown 70.8
2224 Female, age 72, unknown 63.3
1944 Female, age 72, unknown 61.3
2667 Female, age 75, unknown 60.2
1816 Male, age 51, unknown 55.2
Red nucleus
nTPM: 130.8
1821 Female, age 72, unknown 161.0
2823 Male, age 76, right hemisphere 156.9
1865 Male, age 51, unknown 153.9
1904 Male, age 53, unknown 140.0
2769 Male, age 72, unknown 134.3
2227 Male, age 72, unknown 132.2
2785 Male, age 18, unknown 131.2
1954 Female, age 42, unknown 121.3
2503 Female, age 72, unknown 118.2
2725 Female, age 75, unknown 115.8
2588 Male, age 74, left hemisphere 105.9
2584 Male, age 75, left hemisphere 99.4
Substantia nigra
nTPM: 79.4
1889 Female, age 72, unknown 96.3
2583 Male, age 75, right hemisphere 93.4
2590 Female, age 75, unknown 91.1
1851 Male, age 51, unknown 87.0
1941 Male, age 53, unknown 79.5
2409 Female, age 72, unknown 77.8
1916 Female, age 42, unknown 72.0
2699 Male, age 18, unknown 71.2
2241 Male, age 72, unknown 66.7
2665 Male, age 74, both hemispheres 59.2
Superior colliculus
nTPM: 85.1
1913 Female, age 42, unknown 113.6
1995 Male, age 72, unknown 107.2
2587 Male, age 74, left hemisphere 100.4
1895 Male, age 76, right hemisphere 98.7
2668 Female, age 75, unknown 97.0
1839 Male, age 51, unknown 83.7
1796 Male, age 53, unknown 70.5
2087 Female, age 72, unknown 65.6
2261 Male, age 18, unknown 58.8
2664 Male, age 75, both hemispheres 55.5
Ventral tegmental area
nTPM: 98.7
2223 Female, age 72, unknown 159.5
2410 Female, age 72, unknown 109.2
2218 Male, age 76, both hemispheres 91.7
1942 Male, age 51, unknown 82.6
1915 Female, age 42, unknown 75.4
2021 Male, age 53, unknown 73.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 153.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 153.3
Samples: 139

Max nTPM: 888.5
Min nTPM: 21.3
Std nTPM: 120.2
Median nTPM: 122.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 888.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 641.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 583.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 480.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 480.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 415.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 359.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 341.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 329.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 316.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 305.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 426.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 426.1
FF:10158-103A5 76 years, female 426.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 146.1
Pig sample Sample description nTPM
Midbrain
nTPM: 146.1
Samples: 4

Max nTPM: 513.7
Min nTPM: 13.7
Sample A Female 513.7
Sample B Female 27.9
Sample C Male 28.9
Sample D Male 13.7
Periaqueductal gray
nTPM: 19.2
Samples: 3

Max nTPM: 27.0
Min nTPM: 11.2
Sample B Female 19.5
Sample C Male 11.2
Sample D Male 27.0
Substantia nigra
nTPM: 72.4
Samples: 4

Max nTPM: 128.2
Min nTPM: 16.8
Sample A Female 84.9
Sample B Female 16.8
Sample C Male 59.7
Sample D Male 128.2
Superior colliculi
nTPM: 44.5
Samples: 4

Max nTPM: 61.1
Min nTPM: 22.9
Sample A Female 40.4
Sample B Female 22.9
Sample C Male 61.1
Sample D Male 53.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.0
Samples: 4

Max nTPM: 63.5
Min nTPM: 49.5
Sample A Male 61.8
Sample B Male 53.3
Sample C Female 49.5
Sample D Female 63.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
70565129 Antisense, RP_050623_04_C08, Mouse strain C57BL/6J (56 days, male) 4.4
74988616 Antisense, RP_060315_05_F09, Mouse strain C57BL/6J (56 days, male) 1.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.