BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:49.8 nTPM
HPA:49.8 nTPM
GTEx:84.6 nTPM
FANTOM5:173.4 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA025970
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 49.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.8
1857 Female, age 85, left hemisphere 50.1
1854 Male, age 80, left hemisphere 46.0
2289 Male, age 61, right hemisphere 42.8
2290 Female, age 72, unknown 41.4
1781 Male, age 74, unknown 39.8
2288 Male, age 75, left hemisphere 37.6
2481 Female, age 94, left hemisphere 35.2
2846 Female, age 79, unknown 33.4
Claustrum
nTPM: 36.8
2196 Female, age 79, unknown 43.0
2292 Female, age 85, both hemispheres 39.9
2284 Female, age 91, both hemispheres 36.7
2645 Female, age 72, unknown 36.0
2568 Male, age 61, both hemispheres 35.9
2392 Female, age 94, both hemispheres 35.5
1956 Male, age 74, unknown 35.4
2491 Male, age 75, both hemispheres 35.1
2198 Male, age 80, both hemispheres 34.0
Globus pallidus, externus
nTPM: 38.7
2567 Female, age 72, unknown 46.8
2646 Male, age 61, right hemisphere 39.3
2395 Male, age 75, both hemispheres 37.5
1996 Male, age 80, right hemisphere 36.1
2772 Female, age 79, unknown 33.7
Globus pallidus, internus
nTPM: 39.4
2566 Female, age 72, unknown 45.6
2111 Female, age 85, right hemisphere 42.6
2778 Female, age 91, both hemispheres 39.4
1818 Male, age 74, unknown 38.2
2037 Male, age 80, right hemisphere 38.2
2483 Female, age 94, right hemisphere 36.3
2287 Male, age 75, right hemisphere 35.3
Nucleus accumbens
nTPM: 49.8
1783 Male, age 74, unknown 59.4
1856 Female, age 91, right hemisphere 58.3
2824 Male, age 61, right hemisphere 54.4
1806 Female, age 85, left hemisphere 51.4
2698 Female, age 72, unknown 49.9
2391 Female, age 94, left hemisphere 43.7
2286 Male, age 75, left hemisphere 41.9
2732 Male, age 80, right hemisphere 39.3
Nucleus basalis of Meynert
nTPM: 38.0
2393 Male, age 80, right hemisphere 40.9
2569 Male, age 61, both hemispheres 37.4
2821 Male, age 75, both hemispheres 37.0
2484 Female, age 94, left hemisphere 36.5
Nucleus of the diagonal band
nTPM: 32.2
1979 Male, age 74, unknown 34.6
2195 Female, age 85, both hemispheres 34.0
2029 Male, age 61, right hemisphere 31.3
2775 Male, age 80, right hemisphere 31.0
1812 Female, age 91, both hemispheres 30.0
Olfactory tubercle
nTPM: 32.8
2856 Male, age 75, right hemisphere 35.0
1998 Female, age 91, both hemispheres 32.5
2487 Female, age 94, left hemisphere 32.2
1846 Male, age 80, right hemisphere 31.5
Putamen
nTPM: 40.6
1838 Male, age 80, right hemisphere 55.5
1937 Female, age 91, right hemisphere 51.4
2489 Female, age 72, unknown 37.4
1829 Male, age 74, unknown 37.3
2647 Male, age 75, left hemisphere 35.6
2482 Female, age 94, left hemisphere 34.3
2466 Female, age 79, unknown 32.4
Septal nuclei
nTPM: 33.2
2394 Male, age 61, left hemisphere 36.8
2059 Female, age 85, both hemispheres 35.4
2199 Male, age 80, right hemisphere 34.0
2009 Female, age 91, both hemispheres 33.2
2629 Female, age 94, right hemisphere 32.9
2031 Female, age 72, unknown 30.1
1960 Male, age 74, unknown 29.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 84.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.7
Samples: 246

Max nTPM: 155.6
Min nTPM: 5.0
Std nTPM: 20.3
Median nTPM: 41.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 155.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 124.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 117.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 113.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 109.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 109.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 105.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 102.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 100.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 92.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 89.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 84.6
Samples: 246

Max nTPM: 288.9
Min nTPM: 20.0
Std nTPM: 40.7
Median nTPM: 79.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 288.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 206.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 201.0
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 195.0
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 192.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 181.1
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 180.7
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 175.8
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 163.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 159.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 159.0
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Brain - Putamen (basal ganglia)
Average nTPM: 41.9
Samples: 205

Max nTPM: 182.7
Min nTPM: 8.3
Std nTPM: 23.7
Median nTPM: 36.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 182.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 145.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 144.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 136.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 134.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 101.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 98.3
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 93.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 92.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 91.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 87.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 173.4
FF:10164-103B2 76 years, female 173.4
Globus pallidus
Scaled Tags Per Million: 56.5
FF:10161-103A8 76 years, female 66.4
FF:10175-103C4 60 years, female 46.5
Nucleus accumbens
Scaled Tags Per Million: 30.7
FF:10037-101F1 23-56 years, mixed 30.7
Putamen
Scaled Tags Per Million: 123.8
FF:10176-103C5 60 years, female 123.8

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The Human Protein Atlas

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