MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.0 nTPM
HPA:38.0 nTPM
GTEx:33.5 nTPM
FANTOM5:67.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.9
1830 Male, age 51, unknown 39.6
2219 Male, age 76, both hemispheres 39.3
1833 Male, age 53, unknown 39.2
1870 Female, age 42, unknown 37.4
2411 Female, age 72, unknown 37.1
2019 Male, age 18, unknown 35.2
2666 Male, age 74, left hemisphere 34.4
1827 Male, age 72, unknown 33.7
2828 Female, age 72, unknown 33.2
2586 Male, age 75, left hemisphere 30.3
Dorsal raphe nucleus
nTPM: 34.1
2750 Male, age 76, both hemispheres 37.9
2016 Female, age 72, unknown 35.5
1828 Male, age 53, unknown 33.5
2047 Male, age 72, unknown 33.1
2298 Female, age 72, unknown 30.7
Inferior colliculus
nTPM: 34.6
2849 Male, age 72, unknown 36.7
1890 Male, age 53, unknown 35.6
1848 Female, age 42, unknown 33.7
2097 Female, age 72, unknown 32.6
Median raphe nucleus
nTPM: 37.5
2220 Male, age 76, midline 37.5
Pedunculopontine tegmental nucleus
nTPM: 37.9
2338 Male, age 61, both hemispheres 41.2
2334 Male, age 80, both hemispheres 36.3
1921 Female, age 85, both hemispheres 36.1
Periaquaductal grey, anterior
nTPM: 32.6
1947 Male, age 18, unknown 34.5
2502 Female, age 75, unknown 31.9
1795 Male, age 51, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 36.7
2850 Male, age 76, both hemispheres 40.2
2464 Female, age 72, unknown 37.5
1831 Male, age 72, unknown 36.5
1840 Male, age 53, unknown 32.4
Periaquaductal grey, lateral
nTPM: 38.0
2140 Male, age 76, both hemispheres 40.1
2272 Male, age 74, both hemispheres 37.4
2053 Male, age 18, unknown 36.5
Pretectal area
nTPM: 34.7
2316 Male, age 76, right hemisphere 38.4
2273 Male, age 74, both hemispheres 37.0
2407 Male, age 75, both hemispheres 36.6
2825 Male, age 18, unknown 35.8
2224 Female, age 72, unknown 35.1
2667 Female, age 75, unknown 34.3
1815 Male, age 53, unknown 33.6
1944 Female, age 72, unknown 33.4
2007 Male, age 72, unknown 33.0
1816 Male, age 51, unknown 32.6
1817 Female, age 42, unknown 32.3
Red nucleus
nTPM: 36.4
2823 Male, age 76, right hemisphere 38.8
2588 Male, age 74, left hemisphere 38.2
1904 Male, age 53, unknown 37.7
2227 Male, age 72, unknown 37.4
2769 Male, age 72, unknown 37.2
1865 Male, age 51, unknown 37.0
2503 Female, age 72, unknown 36.6
1954 Female, age 42, unknown 35.8
2785 Male, age 18, unknown 35.3
2725 Female, age 75, unknown 35.2
2584 Male, age 75, left hemisphere 34.9
1821 Female, age 72, unknown 33.1
Substantia nigra
nTPM: 33.9
2409 Female, age 72, unknown 37.9
2590 Female, age 75, unknown 37.5
1941 Male, age 53, unknown 36.0
2699 Male, age 18, unknown 36.0
2583 Male, age 75, right hemisphere 34.3
2665 Male, age 74, both hemispheres 33.0
1851 Male, age 51, unknown 32.8
2241 Male, age 72, unknown 32.0
1889 Female, age 72, unknown 31.7
1916 Female, age 42, unknown 27.5
Superior colliculus
nTPM: 35.0
1913 Female, age 42, unknown 41.7
1995 Male, age 72, unknown 37.8
1895 Male, age 76, right hemisphere 36.0
1839 Male, age 51, unknown 35.2
2087 Female, age 72, unknown 34.8
2587 Male, age 74, left hemisphere 33.6
2664 Male, age 75, both hemispheres 33.4
2668 Female, age 75, unknown 33.4
2261 Male, age 18, unknown 32.3
1796 Male, age 53, unknown 31.6
Ventral tegmental area
nTPM: 34.8
2223 Female, age 72, unknown 38.4
2021 Male, age 53, unknown 36.4
1942 Male, age 51, unknown 34.6
2218 Male, age 76, both hemispheres 34.3
2410 Female, age 72, unknown 33.4
1915 Female, age 42, unknown 31.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.5
Samples: 139

Max nTPM: 77.0
Min nTPM: 6.8
Std nTPM: 10.8
Median nTPM: 32.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 77.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 62.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 61.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 61.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 58.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 54.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 54.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 49.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 48.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 48.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.9
FF:10158-103A5 76 years, female 67.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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