BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:36.7 nTPM
HPA:36.7 nTPM
GTEx:37.0 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:7.0 nTPM
Mouse:22.5 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA014500
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.8
2288 Male, age 75, left hemisphere 35.3
2290 Female, age 72, unknown 34.0
2481 Female, age 94, left hemisphere 33.5
1857 Female, age 85, left hemisphere 33.2
1781 Male, age 74, unknown 31.8
1854 Male, age 80, left hemisphere 31.7
2289 Male, age 61, right hemisphere 31.7
2846 Female, age 79, unknown 31.4
Claustrum
nTPM: 32.2
2568 Male, age 61, both hemispheres 34.0
2198 Male, age 80, both hemispheres 33.7
2645 Female, age 72, unknown 33.0
2491 Male, age 75, both hemispheres 32.2
2196 Female, age 79, unknown 32.0
2284 Female, age 91, both hemispheres 31.7
2292 Female, age 85, both hemispheres 31.7
1956 Male, age 74, unknown 30.9
2392 Female, age 94, both hemispheres 30.9
Globus pallidus, externus
nTPM: 36.7
2772 Female, age 79, unknown 40.0
1996 Male, age 80, right hemisphere 37.8
2646 Male, age 61, right hemisphere 36.3
2567 Female, age 72, unknown 35.2
2395 Male, age 75, both hemispheres 34.3
Globus pallidus, internus
nTPM: 35.4
1818 Male, age 74, unknown 38.5
2287 Male, age 75, right hemisphere 38.1
2037 Male, age 80, right hemisphere 36.4
2483 Female, age 94, right hemisphere 36.0
2778 Female, age 91, both hemispheres 34.5
2111 Female, age 85, right hemisphere 32.2
2566 Female, age 72, unknown 32.2
Nucleus accumbens
nTPM: 32.2
2286 Male, age 75, left hemisphere 34.6
1806 Female, age 85, left hemisphere 33.4
2732 Male, age 80, right hemisphere 32.8
1856 Female, age 91, right hemisphere 32.5
1783 Male, age 74, unknown 32.3
2698 Female, age 72, unknown 31.3
2824 Male, age 61, right hemisphere 30.7
2391 Female, age 94, left hemisphere 30.0
Nucleus basalis of Meynert
nTPM: 34.3
2484 Female, age 94, left hemisphere 36.1
2569 Male, age 61, both hemispheres 35.8
2821 Male, age 75, both hemispheres 34.1
2393 Male, age 80, right hemisphere 31.3
Nucleus of the diagonal band
nTPM: 32.9
2029 Male, age 61, right hemisphere 34.4
1979 Male, age 74, unknown 34.0
1812 Female, age 91, both hemispheres 32.9
2775 Male, age 80, right hemisphere 32.2
2195 Female, age 85, both hemispheres 31.0
Olfactory tubercle
nTPM: 32.2
1998 Female, age 91, both hemispheres 33.1
1846 Male, age 80, right hemisphere 32.3
2856 Male, age 75, right hemisphere 31.8
2487 Female, age 94, left hemisphere 31.5
Putamen
nTPM: 32.2
2647 Male, age 75, left hemisphere 33.6
2466 Female, age 79, unknown 32.9
2489 Female, age 72, unknown 32.9
2482 Female, age 94, left hemisphere 32.3
1937 Female, age 91, right hemisphere 31.5
1829 Male, age 74, unknown 31.1
1838 Male, age 80, right hemisphere 31.1
Septal nuclei
nTPM: 32.5
2394 Male, age 61, left hemisphere 34.6
2199 Male, age 80, right hemisphere 34.1
2059 Female, age 85, both hemispheres 32.5
2031 Female, age 72, unknown 32.2
1960 Male, age 74, unknown 31.9
2009 Female, age 91, both hemispheres 31.4
2629 Female, age 94, right hemisphere 30.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.1
Samples: 246

Max nTPM: 102.3
Min nTPM: 11.4
Std nTPM: 12.9
Median nTPM: 28.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 102.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 83.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 77.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 69.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 68.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 65.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 63.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 63.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 62.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 62.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 62.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.0
Samples: 246

Max nTPM: 129.5
Min nTPM: 10.6
Std nTPM: 12.9
Median nTPM: 24.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 129.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 93.8
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 78.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 69.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 63.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 59.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 55.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 53.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 52.8
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 51.9
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 51.8
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Brain - Putamen (basal ganglia)
Average nTPM: 37.0
Samples: 205

Max nTPM: 114.2
Min nTPM: 13.2
Std nTPM: 16.9
Median nTPM: 32.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 114.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 107.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 107.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 103.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 92.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 88.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 82.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 69.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 69.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 67.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 64.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.1
FF:10164-103B2 76 years, female 19.1
Globus pallidus
Scaled Tags Per Million: 23.6
FF:10175-103C4 60 years, female 27.6
FF:10161-103A8 76 years, female 19.6
Nucleus accumbens
Scaled Tags Per Million: 20.6
FF:10037-101F1 23-56 years, mixed 20.6
Putamen
Scaled Tags Per Million: 16.0
FF:10176-103C5 60 years, female 16.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.0
Pig sample Sample description nTPM
Caudate
nTPM: 6.2
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 6.9
Sample C Male 7.3
Sample D Male 6.3
Putamen
nTPM: 7.0
Samples: 4

Max nTPM: 9.4
Min nTPM: 4.7
Sample A Female 4.7
Sample B Female 5.8
Sample C Male 9.4
Sample D Male 8.0
Septum
nTPM: 5.6
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.0
Sample A Female 5.2
Sample B Female 5.0
Sample C Male 7.2
Sample D Male 5.1
Ventral pallidum
nTPM: 5.3
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 5.0
Sample C Male 7.2
Sample D Male 4.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.7
Samples: 4

Max nTPM: 18.7
Min nTPM: 15.2
Sample A Male 16.7
Sample B Male 15.2
Sample C Female 16.3
Sample D Female 18.7
Septum
nTPM: 22.5
Samples: 4

Max nTPM: 27.4
Min nTPM: 19.0
Sample A Male 19.0
Sample B Male 27.4
Sample C Female 22.2
Sample D Female 21.2
Ventral forebrain
nTPM: 17.2
Samples: 4

Max nTPM: 18.7
Min nTPM: 16.3
Sample A Male 16.3
Sample B Male 16.4
Sample C Female 18.7
Sample D Female 17.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
67792188 Antisense, RP_040920_01_C06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
67792188 Antisense, RP_040920_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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