MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.9 nTPM
HPA:40.9 nTPM
GTEx:42.0 nTPM
FANTOM5:23.9 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:15.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.0
2411 Female, age 72, unknown 38.5
2666 Male, age 74, left hemisphere 38.5
2019 Male, age 18, unknown 38.3
2219 Male, age 76, both hemispheres 38.1
2828 Female, age 72, unknown 37.4
1827 Male, age 72, unknown 36.7
2586 Male, age 75, left hemisphere 36.4
1833 Male, age 53, unknown 35.9
1870 Female, age 42, unknown 35.4
1830 Male, age 51, unknown 34.4
Dorsal raphe nucleus
nTPM: 39.5
2298 Female, age 72, unknown 43.2
2047 Male, age 72, unknown 40.4
1828 Male, age 53, unknown 39.4
2750 Male, age 76, both hemispheres 39.4
2016 Female, age 72, unknown 34.9
Inferior colliculus
nTPM: 35.7
2097 Female, age 72, unknown 38.6
1890 Male, age 53, unknown 36.7
1848 Female, age 42, unknown 35.0
2849 Male, age 72, unknown 32.4
Median raphe nucleus
nTPM: 40.9
2220 Male, age 76, midline 40.9
Pedunculopontine tegmental nucleus
nTPM: 38.1
2334 Male, age 80, both hemispheres 41.1
1921 Female, age 85, both hemispheres 39.1
2338 Male, age 61, both hemispheres 34.0
Periaquaductal grey, anterior
nTPM: 37.9
2502 Female, age 75, unknown 39.6
1947 Male, age 18, unknown 37.6
1795 Male, age 51, unknown 36.4
Periaquaductal grey, dorsal
nTPM: 34.4
1831 Male, age 72, unknown 35.4
2850 Male, age 76, both hemispheres 34.7
2464 Female, age 72, unknown 34.4
1840 Male, age 53, unknown 33.0
Periaquaductal grey, lateral
nTPM: 34.3
2272 Male, age 74, both hemispheres 35.0
2053 Male, age 18, unknown 34.4
2140 Male, age 76, both hemispheres 33.5
Pretectal area
nTPM: 37.0
2007 Male, age 72, unknown 41.1
1817 Female, age 42, unknown 40.8
1816 Male, age 51, unknown 40.1
1944 Female, age 72, unknown 39.8
2224 Female, age 72, unknown 38.4
2667 Female, age 75, unknown 36.9
1815 Male, age 53, unknown 36.4
2825 Male, age 18, unknown 35.8
2316 Male, age 76, right hemisphere 34.0
2273 Male, age 74, both hemispheres 33.9
2407 Male, age 75, both hemispheres 29.7
Red nucleus
nTPM: 38.6
1954 Female, age 42, unknown 42.3
1821 Female, age 72, unknown 42.0
2588 Male, age 74, left hemisphere 39.2
2503 Female, age 72, unknown 39.0
2769 Male, age 72, unknown 39.0
2725 Female, age 75, unknown 38.9
2227 Male, age 72, unknown 38.7
1904 Male, age 53, unknown 38.6
1865 Male, age 51, unknown 37.1
2823 Male, age 76, right hemisphere 36.8
2785 Male, age 18, unknown 36.6
2584 Male, age 75, left hemisphere 35.0
Substantia nigra
nTPM: 38.5
1916 Female, age 42, unknown 46.3
2665 Male, age 74, both hemispheres 44.0
1851 Male, age 51, unknown 41.7
1889 Female, age 72, unknown 40.0
1941 Male, age 53, unknown 39.4
2699 Male, age 18, unknown 37.1
2241 Male, age 72, unknown 36.1
2590 Female, age 75, unknown 35.1
2583 Male, age 75, right hemisphere 33.9
2409 Female, age 72, unknown 31.5
Superior colliculus
nTPM: 34.8
2587 Male, age 74, left hemisphere 37.1
2087 Female, age 72, unknown 36.7
2261 Male, age 18, unknown 36.7
1796 Male, age 53, unknown 35.7
2668 Female, age 75, unknown 35.2
1895 Male, age 76, right hemisphere 35.1
1995 Male, age 72, unknown 33.9
1839 Male, age 51, unknown 33.7
1913 Female, age 42, unknown 33.1
2664 Male, age 75, both hemispheres 31.3
Ventral tegmental area
nTPM: 39.2
2218 Male, age 76, both hemispheres 41.6
1915 Female, age 42, unknown 40.9
2410 Female, age 72, unknown 40.4
1942 Male, age 51, unknown 39.2
2021 Male, age 53, unknown 37.8
2223 Female, age 72, unknown 35.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 139

Max nTPM: 88.1
Min nTPM: 17.4
Std nTPM: 13.6
Median nTPM: 41.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 88.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 81.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 80.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 76.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 75.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 71.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 69.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 68.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 63.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 63.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.9
FF:10158-103A5 76 years, female 23.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.6
Sample A Female 6.3
Sample B Female 5.6
Sample C Male 6.7
Sample D Male 6.0
Periaqueductal gray
nTPM: 5.1
Samples: 3

Max nTPM: 6.1
Min nTPM: 4.0
Sample B Female 5.1
Sample C Male 6.1
Sample D Male 4.0
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 7.4
Min nTPM: 4.6
Sample A Female 7.2
Sample B Female 5.6
Sample C Male 7.4
Sample D Male 4.6
Superior colliculi
nTPM: 6.6
Samples: 4

Max nTPM: 8.0
Min nTPM: 4.6
Sample A Female 8.0
Sample B Female 4.6
Sample C Male 7.3
Sample D Male 6.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.0
Sample A Male 15.6
Sample B Male 17.7
Sample C Female 13.0
Sample D Female 17.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
67792188 Antisense, RP_040920_01_C06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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