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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:399.1 nTPM
HPA:399.1 nTPM
FANTOM5:151.5 Scaled Tags Per Million
Pig:497.9 nTPM
Mouse:368.7 nTPM
Allen mouse:0.5 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 399.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 362.0
2032 Female, age 42, unknown 404.4
2497 Male, age 66, unknown 348.9
2396 Male, age 61, right hemisphere 332.7
Centromedial thalamic nucleus
nTPM: 341.3
2401 Male, age 76, right hemisphere 413.1
2279 Female, age 85, left hemisphere 269.5
Habenula
nTPM: 390.9
1957 Male, age 80, both hemispheres 435.1
2203 Male, age 61, left hemisphere 391.5
2276 Male, age 66, unknown 389.0
2252 Male, age 62, unknown 348.2
Lateral geniculate body
nTPM: 399.1
2106 Female, age 67, right hemisphere 492.8
2035 Female, age 72, unknown 438.4
1953 Male, age 62, unknown 436.8
2399 Male, age 61, left hemisphere 436.1
2857 Male, age 74, right hemisphere 369.7
2575 Female, age 94, right hemisphere 346.9
2841 Male, age 80, both hemispheres 337.4
2659 Male, age 66, unknown 334.3
Lateral thalamic nuclei
nTPM: 361.1
2573 Female, age 94, left hemisphere 398.1
2765 Female, age 67, both hemispheres 386.6
1903 Male, age 76, left hemisphere 364.1
2661 Female, age 72, unknown 329.4
2577 Male, age 74, both hemispheres 327.2
Medial dorsal thalamic nucleus
nTPM: 383.5
2572 Female, age 94, right hemisphere 458.4
2498 Male, age 66, unknown 430.1
1971 Male, age 61, right hemisphere 421.6
1810 Male, age 48, unknown 401.3
2283 Male, age 80, right hemisphere 398.9
1859 Male, age 76, both hemispheres 394.5
2026 Male, age 62, unknown 383.1
2402 Female, age 67, both hemispheres 376.9
2492 Male, age 75, right hemisphere 361.4
1930 Female, age 42, unknown 361.1
2576 Male, age 74, both hemispheres 358.5
2039 Female, age 72, unknown 330.1
2660 Female, age 72, unknown 309.3
Medial geniculate body
nTPM: 356.4
2650 Female, age 94, left hemisphere 416.2
1811 Female, age 42, unknown 395.9
2657 Male, age 74, right hemisphere 364.4
2207 Male, age 80, right hemisphere 353.8
2217 Female, age 72, unknown 337.4
2049 Male, age 76, both hemispheres 318.8
2571 Male, age 75, right hemisphere 308.5
Nucleus reuniens
nTPM: 330.8
2212 Female, age 67, left hemisphere 386.2
2205 Male, age 80, left hemisphere 327.4
2210 Female, age 85, left hemisphere 278.9
Nucleus rhomboideus
nTPM: 331.7
2206 Male, age 80, both hemispheres 406.1
2213 Female, age 67, left hemisphere 312.5
2280 Female, age 85, left hemisphere 276.6
Posterior thalamic nucleus
nTPM: 388.7
2649 Female, age 94, both hemispheres 440.9
2266 Male, age 76, right hemisphere 395.5
2655 Male, age 74, right hemisphere 363.0
2495 Female, age 67, right hemisphere 355.4
Pulvinar
nTPM: 398.3
1972 Male, age 62, unknown 442.0
1932 Male, age 80, right hemisphere 436.4
2398 Male, age 61, left hemisphere 417.6
1899 Female, age 42, unknown 398.6
2724 Male, age 74, right hemisphere 392.9
2496 Female, age 67, right hemisphere 391.5
2499 Male, age 66, unknown 387.8
2214 Male, age 76, right hemisphere 379.7
1929 Male, age 48, unknown 376.0
2582 Female, age 72, unknown 360.8
Subthalamic nucleus
nTPM: 339.3
2406 Female, age 72, unknown 379.0
2282 Male, age 61, both hemispheres 364.3
2275 Male, age 66, unknown 355.8
2124 Male, age 62, unknown 338.6
2658 Male, age 74, both hemispheres 336.9
2779 Female, age 42, unknown 328.6
2056 Female, age 72, unknown 311.6
2216 Male, age 48, unknown 299.8
Ventral posterolateral thalamic nucleus
nTPM: 366.9
2740 Male, age 76, right hemisphere 451.4
2197 Male, age 80, both hemispheres 400.4
2397 Male, age 61, right hemisphere 393.2
2570 Male, age 75, right hemisphere 333.9
2578 Male, age 74, both hemispheres 322.1
2581 Female, age 72, unknown 300.5
Ventral posteromedial thalamic nucleus
nTPM: 367.1
2202 Male, age 61, left hemisphere 444.0
2758 Male, age 80, both hemispheres 392.9
2281 Male, age 75, right hemisphere 340.0
2127 Male, age 76, right hemisphere 329.4
2653 Male, age 74, both hemispheres 329.1
Ventral thalamic nuclei
nTPM: 357.5
1845 Male, age 48, unknown 412.4
1860 Male, age 76, both hemispheres 406.0
2285 Male, age 62, unknown 367.0
1912 Female, age 42, unknown 360.3
2204 Male, age 80, both hemispheres 350.1
2580 Male, age 66, unknown 346.0
2858 Female, age 72, unknown 339.9
2291 Female, age 72, unknown 329.0
2652 Male, age 74, left hemisphere 306.8
Ventromedial nucleus
nTPM: 318.7
1982 Female, age 72, unknown 332.5
1822 Female, age 42, unknown 304.8
Zona incerta
nTPM: 314.9
2208 Male, age 80, right hemisphere 347.7
2215 Male, age 66, unknown 331.4
2822 Male, age 74, right hemisphere 306.8
2403 Male, age 62, unknown 299.4
2663 Female, age 72, unknown 289.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 151.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 151.5
FF:10154-103A1 76 years, female 151.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 497.9
Pig sample Sample description nTPM
Thalamus
nTPM: 497.9
Samples: 4

Max nTPM: 719.8
Min nTPM: 319.9
Sample A Female 719.8
Sample B Female 348.7
Sample C Male 603.2
Sample D Male 319.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 368.7
Mouse sample Sample description nTPM
Thalamus
nTPM: 368.7
Samples: 4

Max nTPM: 405.1
Min nTPM: 349.2
Sample A Male 349.2
Sample B Male 368.9
Sample C Female 405.1
Sample D Female 351.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.5
75233570 Antisense, RP_051121_03_C01, Mouse strain C57BL/6J (56 days, male) 0.5

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