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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:207.1 nTPM
GTEx:207.1 nTPM
FANTOM5:228.0 Scaled Tags Per Million
Pig:171.9 nTPM
Mouse:414.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 207.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 207.1
Samples: 105

Max nTPM: 384.3
Min nTPM: 21.1
Std nTPM: 92.7
Median nTPM:
218_1 71 years, female 384.3
319_1 81 years, male 379.9
352_1 62 years, male 374.8
386_1 76 years, male 369.4
354_1 81 years, female 365.6
163_1 78 years, male 357.8
377_1 82 years, female 356.4
350_1 84 years, female 350.7
452_1 88 years, female 338.7
356_1 87 years, female 335.1
243_1 75 years, male 326.8
351_1 91 years, male 321.1
353_1 82 years, female 321.0
293_1 68 years, female 320.6
506_1 65 years, male 314.2
349_1 83 years, male 312.3
321_1 62 years, female 309.7
172_1 72 years, female 309.1
177_1 74 years, male 307.9
376_1 75 years, female 305.3
425_1 59 years, female 304.5
320_1 89 years, female 299.6
322_1 76 years, male 299.1
355_1 70 years, female 294.2
6_1 73 years, female 290.1
335_1 73 years, female 290.0
318_1 68 years, male 281.0
379_1 60 years, male 264.7
447_1 81 years, male 264.7
394_1 75 years, female 264.4
316_1 62 years, male 263.1
406_1 79 years, male 261.9
295_1 61 years, female 260.9
292_1 71 years, male 259.7
317_1 60 years, male 253.5
2_1 77 years, female 250.1
503_1 68 years, male 244.6
173_1 67 years, male 239.3
404_1 82 years, female 239.2
286_1 68 years, female 238.3
189_1 76 years, male 237.6
375_1 74 years, female 236.0
384_1 83 years, male 235.7
480_1 63 years, male 233.0
251_1 78 years, male 229.8
115_1 83 years, male 227.2
237_1 82 years, male 225.4
4_1 88 years, female 224.4
405_1 91 years, male 215.1
229_1 69 years, female 214.2
264_1 73 years, female 213.2
348_1 84 years, male 211.1
389_1 86 years, female 210.9
153_1 70 years, female 205.4
347_1 72 years, male 205.2
291_1 76 years, male 204.9
99_1 64 years, male 203.7
517_1 88 years, male 202.6
526_1 61 years, male 193.4
145_1 84 years, male 182.4
9_1 66 years, female 179.6
246_1 77 years, male 178.8
18_1 88 years, male 174.3
17_1 71 years, male 174.2
41_1 94 years, female 172.1
254_1 77 years, female 170.2
137_1 83 years, male 168.6
120_1 70 years, female 167.8
265_1 87 years, male 165.4
396_1 62 years, male 164.8
468_1 89 years, male 163.5
266_1 85 years, male 162.7
518_1 75 years, female 162.2
109_1 81 years, female 161.3
307_1 66 years, female 161.2
35_1 74 years, female 159.3
126_1 63 years, male 154.4
311_1 78 years, male 146.4
288_1 66 years, female 142.8
324_1 76 years, male 135.3
117_1 61 years, male 131.8
217_1 76 years, male 124.8
313_1 79 years, female 116.8
499_1 55 years, female 113.1
142_1 61 years, female 111.8
81_1 67 years, male 109.9
42_1 85 years, male 109.4
314_1 67 years, male 106.6
139_1 64 years, female 104.5
315_1 62 years, female 100.0
119_1 70 years, female 99.7
162_1 79 years, female 98.4
43_1 64 years, female 80.5
495_1 57 years, female 78.5
308_1 70 years, female 77.9
32_1 67 years, male 70.8
415_1 77 years, female 67.5
466_1 57 years, female 57.9
414_1 84 years, female 56.1
501_1 88 years, male 56.0
89_1 63 years, male 54.0
149_1 88 years, male 48.0
413_1 59 years, female 30.4
490_1 67 years, female 24.7
491_1 89 years, female 21.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 228.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 228.0
FF:10030-101E3 24-65 years, mixed 228.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 171.9
Pig sample Sample description nTPM
Retina
nTPM: 171.9
Samples: 4

Max nTPM: 196.9
Min nTPM: 143.5
Sample A Female 160.4
Sample B Female 196.9
Sample C Male 186.7
Sample D Male 143.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 414.7
Mouse sample Sample description nTPM
Retina
nTPM: 414.7
Samples: 4

Max nTPM: 472.0
Min nTPM: 356.9
Sample A Male 422.3
Sample B Male 407.7
Sample C Female 472.0
Sample D Female 356.9

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by the Knut & Alice Wallenberg Foundation.