MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:380.4 nTPM
HPA:380.4 nTPM
GTEx:396.0 nTPM
FANTOM5:174.0 Scaled Tags Per Million
Pig:498.5 nTPM
Mouse:329.6 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 380.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 340.9
2019 Male, age 18, unknown 388.9
2219 Male, age 76, both hemispheres 380.6
2411 Female, age 72, unknown 362.3
1827 Male, age 72, unknown 355.1
2828 Female, age 72, unknown 339.9
1833 Male, age 53, unknown 324.9
2666 Male, age 74, left hemisphere 319.1
1870 Female, age 42, unknown 317.1
2586 Male, age 75, left hemisphere 313.6
1830 Male, age 51, unknown 307.4
Dorsal raphe nucleus
nTPM: 360.6
2298 Female, age 72, unknown 412.9
1828 Male, age 53, unknown 369.0
2047 Male, age 72, unknown 355.0
2750 Male, age 76, both hemispheres 344.9
2016 Female, age 72, unknown 321.1
Inferior colliculus
nTPM: 339.3
2097 Female, age 72, unknown 366.8
1890 Male, age 53, unknown 348.0
1848 Female, age 42, unknown 332.7
2849 Male, age 72, unknown 309.5
Median raphe nucleus
nTPM: 365.0
2220 Male, age 76, midline 365.0
Pedunculopontine tegmental nucleus
nTPM: 354.3
1921 Female, age 85, both hemispheres 375.2
2334 Male, age 80, both hemispheres 358.8
2338 Male, age 61, both hemispheres 328.9
Periaquaductal grey, anterior
nTPM: 342.4
1795 Male, age 51, unknown 355.3
1947 Male, age 18, unknown 340.8
2502 Female, age 75, unknown 331.3
Periaquaductal grey, dorsal
nTPM: 320.3
1831 Male, age 72, unknown 324.8
2464 Female, age 72, unknown 324.6
2850 Male, age 76, both hemispheres 317.5
1840 Male, age 53, unknown 314.3
Periaquaductal grey, lateral
nTPM: 320.8
2272 Male, age 74, both hemispheres 353.9
2053 Male, age 18, unknown 305.0
2140 Male, age 76, both hemispheres 303.6
Pretectal area
nTPM: 368.4
1944 Female, age 72, unknown 418.0
1817 Female, age 42, unknown 415.9
2007 Male, age 72, unknown 413.3
1816 Male, age 51, unknown 409.4
2667 Female, age 75, unknown 385.0
1815 Male, age 53, unknown 371.8
2224 Female, age 72, unknown 359.5
2273 Male, age 74, both hemispheres 354.1
2825 Male, age 18, unknown 311.4
2316 Male, age 76, right hemisphere 309.7
2407 Male, age 75, both hemispheres 303.9
Red nucleus
nTPM: 341.2
1821 Female, age 72, unknown 382.6
2785 Male, age 18, unknown 366.7
2725 Female, age 75, unknown 364.5
2503 Female, age 72, unknown 344.1
1954 Female, age 42, unknown 343.4
2823 Male, age 76, right hemisphere 337.8
2227 Male, age 72, unknown 336.6
2769 Male, age 72, unknown 336.2
1904 Male, age 53, unknown 334.7
1865 Male, age 51, unknown 331.4
2588 Male, age 74, left hemisphere 318.5
2584 Male, age 75, left hemisphere 297.8
Substantia nigra
nTPM: 380.4
1916 Female, age 42, unknown 462.9
1851 Male, age 51, unknown 414.5
1889 Female, age 72, unknown 406.1
1941 Male, age 53, unknown 404.1
2241 Male, age 72, unknown 385.0
2409 Female, age 72, unknown 365.6
2665 Male, age 74, both hemispheres 360.6
2699 Male, age 18, unknown 355.8
2590 Female, age 75, unknown 335.3
2583 Male, age 75, right hemisphere 314.1
Superior colliculus
nTPM: 335.4
2087 Female, age 72, unknown 392.3
1796 Male, age 53, unknown 354.1
2261 Male, age 18, unknown 352.5
2668 Female, age 75, unknown 338.5
1895 Male, age 76, right hemisphere 337.7
2587 Male, age 74, left hemisphere 333.3
1913 Female, age 42, unknown 320.0
1839 Male, age 51, unknown 316.6
1995 Male, age 72, unknown 310.8
2664 Male, age 75, both hemispheres 298.5
Ventral tegmental area
nTPM: 371.0
2410 Female, age 72, unknown 424.7
2218 Male, age 76, both hemispheres 413.7
1915 Female, age 42, unknown 395.7
1942 Male, age 51, unknown 350.9
2021 Male, age 53, unknown 320.9
2223 Female, age 72, unknown 320.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 396.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 396.0
Samples: 139

Max nTPM: 980.7
Min nTPM: 134.8
Std nTPM: 150.8
Median nTPM: 371.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 980.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 812.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 803.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 793.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 756.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 737.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 726.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 685.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 652.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 650.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 608.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 174.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 174.0
FF:10158-103A5 76 years, female 174.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 498.5
Pig sample Sample description nTPM
Midbrain
nTPM: 413.7
Samples: 4

Max nTPM: 560.4
Min nTPM: 318.9
Sample A Female 418.0
Sample B Female 318.9
Sample C Male 560.4
Sample D Male 357.5
Periaqueductal gray
nTPM: 276.8
Samples: 3

Max nTPM: 323.7
Min nTPM: 234.0
Sample B Female 272.7
Sample C Male 323.7
Sample D Male 234.0
Substantia nigra
nTPM: 350.5
Samples: 4

Max nTPM: 520.5
Min nTPM: 236.2
Sample A Female 520.5
Sample B Female 267.9
Sample C Male 377.4
Sample D Male 236.2
Superior colliculi
nTPM: 498.5
Samples: 4

Max nTPM: 700.4
Min nTPM: 375.8
Sample A Female 527.8
Sample B Female 375.8
Sample C Male 700.4
Sample D Male 389.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 329.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 329.6
Samples: 4

Max nTPM: 348.0
Min nTPM: 308.2
Sample A Male 348.0
Sample B Male 323.7
Sample C Female 308.2
Sample D Female 338.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
75233570 Antisense, RP_051121_03_C01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.