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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:201.1 nTPM
HPA:201.1 nTPM
GTEx:171.7 nTPM
FANTOM5:317.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB008713
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 201.1
overview
Male, age 65
Small intestine sample 232
nTPM: 218.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 218.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 166.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 200.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 171.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 171.7
Samples: 187

Max nTPM: 558.4
Min nTPM: 62.3
Std nTPM: 65.0
Median nTPM: 165.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 558.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 360.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 317.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 310.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 304.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 303.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 294.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 280.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 275.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 269.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 268.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 258.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 258.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 255.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 254.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 251.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 247.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 244.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 242.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 241.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 240.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 239.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 238.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 236.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 234.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 231.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 231.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 230.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 229.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 229.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 228.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 226.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 226.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 225.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 225.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 224.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 224.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 221.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 219.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 217.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 216.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 215.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 215.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 214.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 214.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 212.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 212.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 212.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 212.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 212.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 210.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 209.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 207.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 207.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 207.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 206.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 205.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 204.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 204.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 202.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 202.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 202.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 198.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 197.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 196.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 195.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 194.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 194.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 193.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 192.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 192.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 191.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 191.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 190.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 189.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 188.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 185.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 185.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 183.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 181.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 181.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 181.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 180.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 178.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 178.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 178.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 176.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 175.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 171.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 169.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 169.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 169.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 166.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 165.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 164.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 164.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 162.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 162.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 159.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 159.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 159.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 159.1
GTEX-1192X-2526-SM-59868 50-59 years, male 158.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 156.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 156.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 155.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 155.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 151.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 149.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 149.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 148.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 147.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 147.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 147.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 144.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 143.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 142.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 142.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 141.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 141.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 141.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 140.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 139.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 139.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 137.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 136.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 136.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 135.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 135.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 132.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 132.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 132.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 132.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 130.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 129.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 129.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 128.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 128.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 127.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 127.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 121.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 120.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 120.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 119.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 117.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 117.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 115.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 114.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 113.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 113.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 112.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 108.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 108.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 108.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 108.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 106.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 105.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 105.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 105.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 104.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 103.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 103.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 100.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 100.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 99.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 98.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 96.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 96.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 95.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 93.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 91.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 91.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 89.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 88.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 83.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 83.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 83.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 81.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 80.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 80.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 75.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 74.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 73.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 71.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 66.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 65.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 62.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 317.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 317.8
FF:10024-101D6 15,40,85 years, mixed 317.8

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