MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:197.7 nTPM
HPA:197.7 nTPM
GTEx:112.6 nTPM
FANTOM5:462.5 Scaled Tags Per Million
Pig:79.3 nTPM
Mouse:48.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 197.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 196.8
2219 Male, age 76, both hemispheres 207.8
2666 Male, age 74, left hemisphere 205.0
1833 Male, age 53, unknown 199.8
1830 Male, age 51, unknown 199.3
2828 Female, age 72, unknown 199.2
2586 Male, age 75, left hemisphere 199.0
2019 Male, age 18, unknown 197.8
1827 Male, age 72, unknown 190.1
1870 Female, age 42, unknown 189.0
2411 Female, age 72, unknown 180.8
Dorsal raphe nucleus
nTPM: 182.4
2750 Male, age 76, both hemispheres 191.0
2047 Male, age 72, unknown 185.8
1828 Male, age 53, unknown 184.1
2016 Female, age 72, unknown 182.6
2298 Female, age 72, unknown 168.7
Inferior colliculus
nTPM: 188.4
2849 Male, age 72, unknown 205.2
1848 Female, age 42, unknown 187.6
1890 Male, age 53, unknown 186.9
2097 Female, age 72, unknown 174.1
Median raphe nucleus
nTPM: 195.0
2220 Male, age 76, midline 195.0
Pedunculopontine tegmental nucleus
nTPM: 195.8
2338 Male, age 61, both hemispheres 209.5
2334 Male, age 80, both hemispheres 193.8
1921 Female, age 85, both hemispheres 184.2
Periaquaductal grey, anterior
nTPM: 190.8
2502 Female, age 75, unknown 192.4
1795 Male, age 51, unknown 192.1
1947 Male, age 18, unknown 187.8
Periaquaductal grey, dorsal
nTPM: 189.6
2850 Male, age 76, both hemispheres 208.0
1831 Male, age 72, unknown 187.5
2464 Female, age 72, unknown 184.1
1840 Male, age 53, unknown 179.0
Periaquaductal grey, lateral
nTPM: 196.7
2272 Male, age 74, both hemispheres 202.6
2140 Male, age 76, both hemispheres 199.4
2053 Male, age 18, unknown 188.0
Pretectal area
nTPM: 194.2
2407 Male, age 75, both hemispheres 213.4
2316 Male, age 76, right hemisphere 200.5
2667 Female, age 75, unknown 197.8
1815 Male, age 53, unknown 196.0
1944 Female, age 72, unknown 195.9
1816 Male, age 51, unknown 195.4
1817 Female, age 42, unknown 191.9
2825 Male, age 18, unknown 189.9
2007 Male, age 72, unknown 189.8
2273 Male, age 74, both hemispheres 184.1
2224 Female, age 72, unknown 181.8
Red nucleus
nTPM: 197.7
2588 Male, age 74, left hemisphere 206.5
2785 Male, age 18, unknown 205.5
2823 Male, age 76, right hemisphere 205.1
2584 Male, age 75, left hemisphere 204.9
1865 Male, age 51, unknown 203.2
1904 Male, age 53, unknown 202.5
2769 Male, age 72, unknown 197.3
2227 Male, age 72, unknown 196.5
2503 Female, age 72, unknown 196.5
2725 Female, age 75, unknown 192.5
1954 Female, age 42, unknown 186.7
1821 Female, age 72, unknown 175.3
Substantia nigra
nTPM: 188.7
2665 Male, age 74, both hemispheres 204.4
2699 Male, age 18, unknown 203.2
2583 Male, age 75, right hemisphere 195.1
2590 Female, age 75, unknown 193.3
1941 Male, age 53, unknown 190.5
1889 Female, age 72, unknown 185.6
2409 Female, age 72, unknown 183.0
1851 Male, age 51, unknown 181.5
1916 Female, age 42, unknown 175.6
2241 Male, age 72, unknown 175.2
Superior colliculus
nTPM: 196.8
1913 Female, age 42, unknown 213.7
2664 Male, age 75, both hemispheres 205.5
1995 Male, age 72, unknown 203.6
2087 Female, age 72, unknown 200.2
1895 Male, age 76, right hemisphere 194.8
1796 Male, age 53, unknown 191.9
1839 Male, age 51, unknown 191.6
2668 Female, age 75, unknown 190.3
2261 Male, age 18, unknown 188.8
2587 Male, age 74, left hemisphere 187.3
Ventral tegmental area
nTPM: 188.3
2218 Male, age 76, both hemispheres 198.3
2223 Female, age 72, unknown 194.8
2021 Male, age 53, unknown 189.6
1942 Male, age 51, unknown 188.9
2410 Female, age 72, unknown 183.0
1915 Female, age 42, unknown 175.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 112.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.6
Samples: 139

Max nTPM: 273.0
Min nTPM: 40.8
Std nTPM: 34.1
Median nTPM: 109.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 273.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 216.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 215.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 210.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 200.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 184.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 173.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 163.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 157.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 156.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 156.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 462.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 462.5
FF:10158-103A5 76 years, female 462.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.3
Pig sample Sample description nTPM
Midbrain
nTPM: 79.4
Samples: 4

Max nTPM: 91.8
Min nTPM: 64.0
Sample A Female 91.8
Sample B Female 64.0
Sample C Male 88.6
Sample D Male 73.0
Periaqueductal gray
nTPM: 70.1
Samples: 3

Max nTPM: 77.1
Min nTPM: 65.2
Sample B Female 65.2
Sample C Male 77.1
Sample D Male 68.1
Substantia nigra
nTPM: 78.3
Samples: 4

Max nTPM: 84.7
Min nTPM: 71.2
Sample A Female 71.2
Sample B Female 74.1
Sample C Male 83.3
Sample D Male 84.7
Superior colliculi
nTPM: 76.3
Samples: 4

Max nTPM: 82.5
Min nTPM: 70.4
Sample A Female 73.7
Sample B Female 70.4
Sample C Male 78.6
Sample D Male 82.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.1
Samples: 4

Max nTPM: 51.7
Min nTPM: 42.9
Sample A Male 42.9
Sample B Male 51.7
Sample C Female 50.6
Sample D Female 47.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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