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SRRM2
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:261.5 nTPM
HPA:128.2 nTPM
GTEx:261.5 nTPM
FANTOM5:360.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041411
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 128.2
overview
Male, age 65
Small intestine sample 232
nTPM: 156.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 135.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 112.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 107.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 261.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 261.5
Samples: 187

Max nTPM: 496.4
Min nTPM: 107.2
Std nTPM: 67.2
Median nTPM: 263.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 496.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 425.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 424.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 415.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 409.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 393.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 385.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 383.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 381.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 375.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 373.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 373.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 368.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 361.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 356.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 355.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 349.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 345.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 345.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 335.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 334.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 334.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 333.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 332.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 331.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 330.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 328.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 326.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 326.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 323.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 323.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 322.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 321.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 320.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 319.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 318.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 318.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 317.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 316.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 315.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 314.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 312.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 312.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 310.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 310.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 310.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 308.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 308.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 307.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 307.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 306.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 305.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 304.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 302.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 300.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 298.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 297.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 297.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 296.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 293.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 293.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 292.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 292.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 290.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 288.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 288.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 287.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 287.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 287.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 285.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 280.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 280.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 278.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 277.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 277.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 276.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 275.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 275.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 275.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 274.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 273.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 272.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 272.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 271.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 270.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 268.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 267.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 267.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 266.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 265.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 265.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 265.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 263.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 263.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 262.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 262.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 258.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 256.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 253.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 252.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 251.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 249.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 248.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 247.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 247.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 246.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 244.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 244.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 243.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 243.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 242.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 241.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 240.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 239.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 237.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 236.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 235.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 234.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 233.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 230.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 227.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 227.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 226.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 224.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 224.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 223.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 221.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 220.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 220.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 220.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 218.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 217.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 216.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 216.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 214.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 214.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 214.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 214.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 212.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 212.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 208.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 208.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 208.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 207.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 205.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 204.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 203.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 203.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 202.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 201.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 201.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 200.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 200.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 198.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 197.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 197.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 197.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 196.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 195.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 195.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 194.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 193.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 193.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 192.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 192.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 190.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 188.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 187.9
GTEX-1192X-2526-SM-59868 50-59 years, male 187.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 183.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 176.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 176.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 168.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 167.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 167.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 164.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 160.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 159.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 152.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 149.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 142.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 141.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 131.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 122.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 117.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 111.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 107.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 360.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 360.5
FF:10024-101D6 15,40,85 years, mixed 360.5

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