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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:126.6 nTPM
HPA:126.6 nTPM
GTEx:136.3 nTPM
FANTOM5:216.6 Scaled Tags Per Million
Pig:69.3 nTPM
Mouse:70.3 nTPM
Allen mouse:7.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 126.6
Sample id Sample description nTPM
Amygdala
nTPM: 82.1
1987 Female, age 91, left hemisphere 110.2
2814 Male, age 76, right hemisphere 97.7
2517 Female, age 94, left hemisphere 91.4
2514 Male, age 75, right hemisphere 63.1
2695 Female, age 67, right hemisphere 48.1
Basal amygdala
nTPM: 97.4
2685 Female, age 94, left hemisphere 120.0
2110 Male, age 80, left hemisphere 112.2
2243 Female, age 91, right hemisphere 108.5
2827 Female, age 67, right hemisphere 88.8
1955 Male, age 76, both hemispheres 86.2
2609 Male, age 75, right hemisphere 68.7
Central amygdala
nTPM: 101.1
2826 Female, age 94, left hemisphere 128.2
2701 Female, age 91, right hemisphere 110.4
2239 Male, age 80, left hemisphere 96.3
1905 Male, age 76, both hemispheres 95.1
2515 Male, age 75, right hemisphere 75.5
Corticomedial amygdala
nTPM: 99.0
2242 Female, age 91, right hemisphere 118.9
2829 Male, age 80, left hemisphere 114.4
2429 Female, age 94, left hemisphere 106.2
2535 Female, age 67, right hemisphere 104.8
2240 Male, age 76, both hemispheres 81.4
2428 Male, age 75, right hemisphere 68.1
Lateral amygdala
nTPM: 89.9
2534 Female, age 94, left hemisphere 137.5
2255 Female, age 91, right hemisphere 101.3
1883 Male, age 76, both hemispheres 96.7
2256 Male, age 80, left hemisphere 80.4
2830 Female, age 67, right hemisphere 62.4
2516 Male, age 75, right hemisphere 61.3
Stria terminalis, bed nucleus
nTPM: 126.6
1974 Female, age 91, both hemispheres 148.9
2486 Female, age 94, both hemispheres 116.3
2201 Male, age 74, unknown 114.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 136.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 136.3
Samples: 152

Max nTPM: 402.6
Min nTPM: 22.8
Std nTPM: 55.5
Median nTPM: 129.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 402.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 276.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 275.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 271.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 255.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 248.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 246.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 238.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 235.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 229.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 228.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 226.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 224.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 215.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 211.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 211.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 208.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 203.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 203.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 201.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 199.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 198.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 192.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 191.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 188.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 186.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 182.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 181.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 181.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 175.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 172.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 170.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 169.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 168.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 168.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 166.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 166.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 165.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 163.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 160.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 158.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 157.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 156.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 156.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 155.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 153.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 151.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 150.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 150.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 149.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 148.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 148.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 147.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 147.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 146.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 146.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 145.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 145.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 144.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 143.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 142.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 141.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 140.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 140.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 139.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 136.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 136.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 135.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 135.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 134.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 133.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 132.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 132.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 131.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 130.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 130.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 129.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 128.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 126.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 125.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 124.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 123.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 121.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 120.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 120.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 118.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 118.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 117.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 116.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 115.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 114.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 111.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 111.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 110.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 110.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 110.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 108.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 108.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 107.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 106.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 104.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 104.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 104.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 104.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 103.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 103.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 103.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 102.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 102.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 102.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 101.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 101.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 100.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 100.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 99.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 99.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 99.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 98.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 96.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 94.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 94.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 91.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 91.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 89.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 89.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 88.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 87.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 87.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 84.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 84.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 83.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 82.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 81.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 80.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 76.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 76.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 76.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 73.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 73.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 72.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 68.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 68.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 67.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 61.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 58.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 53.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 53.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 52.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 37.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 34.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 216.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 216.6
FF:10151-102I7 76 years, female 216.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 69.3
Pig sample Sample description nTPM
Amygdala
nTPM: 69.3
Samples: 4

Max nTPM: 91.1
Min nTPM: 51.2
Sample A Female 91.1
Sample B Female 51.2
Sample C Male 64.3
Sample D Male 70.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 70.3
Samples: 4

Max nTPM: 73.4
Min nTPM: 67.5
Sample A Male 73.4
Sample B Male 67.5
Sample C Female 72.0
Sample D Female 68.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.3
68798085 Antisense, RP_050215_01_G03, Mouse strain C57BL/6J (56 days, male) 7.3

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