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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:169.3 nTPM
HPA:169.3 nTPM
FANTOM5:111.2 Scaled Tags Per Million
Pig:93.6 nTPM
Mouse:65.8 nTPM
Allen mouse:3.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 169.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 78.7
2032 Female, age 42, unknown 96.5
2497 Male, age 66, unknown 84.3
2396 Male, age 61, right hemisphere 55.3
Centromedial thalamic nucleus
nTPM: 67.5
2401 Male, age 76, right hemisphere 96.2
2279 Female, age 85, left hemisphere 38.8
Habenula
nTPM: 118.6
1957 Male, age 80, both hemispheres 133.7
2276 Male, age 66, unknown 129.9
2203 Male, age 61, left hemisphere 106.8
2252 Male, age 62, unknown 104.2
Lateral geniculate body
nTPM: 88.8
2106 Female, age 67, right hemisphere 141.7
2035 Female, age 72, unknown 105.8
2399 Male, age 61, left hemisphere 105.0
1953 Male, age 62, unknown 104.3
2857 Male, age 74, right hemisphere 74.0
2841 Male, age 80, both hemispheres 64.5
2659 Male, age 66, unknown 62.9
2575 Female, age 94, right hemisphere 52.4
Lateral thalamic nuclei
nTPM: 86.1
2577 Male, age 74, both hemispheres 115.1
1903 Male, age 76, left hemisphere 101.4
2661 Female, age 72, unknown 76.8
2765 Female, age 67, both hemispheres 71.2
2573 Female, age 94, left hemisphere 66.1
Medial dorsal thalamic nucleus
nTPM: 110.6
2492 Male, age 75, right hemisphere 159.2
2498 Male, age 66, unknown 155.2
2576 Male, age 74, both hemispheres 124.6
2026 Male, age 62, unknown 117.0
2039 Female, age 72, unknown 112.9
1810 Male, age 48, unknown 112.1
1859 Male, age 76, both hemispheres 106.4
1971 Male, age 61, right hemisphere 104.1
2283 Male, age 80, right hemisphere 103.0
1930 Female, age 42, unknown 99.9
2402 Female, age 67, both hemispheres 90.7
2572 Female, age 94, right hemisphere 84.5
2660 Female, age 72, unknown 68.0
Medial geniculate body
nTPM: 89.3
1811 Female, age 42, unknown 117.4
2571 Male, age 75, right hemisphere 104.9
2217 Female, age 72, unknown 86.0
2207 Male, age 80, right hemisphere 85.7
2049 Male, age 76, both hemispheres 84.0
2650 Female, age 94, left hemisphere 79.3
2657 Male, age 74, right hemisphere 67.5
Nucleus reuniens
nTPM: 86.0
2212 Female, age 67, left hemisphere 131.0
2205 Male, age 80, left hemisphere 90.8
2210 Female, age 85, left hemisphere 36.0
Nucleus rhomboideus
nTPM: 62.3
2206 Male, age 80, both hemispheres 109.7
2213 Female, age 67, left hemisphere 40.2
2280 Female, age 85, left hemisphere 36.9
Posterior thalamic nucleus
nTPM: 86.2
2655 Male, age 74, right hemisphere 89.3
2649 Female, age 94, both hemispheres 86.9
2495 Female, age 67, right hemisphere 84.7
2266 Male, age 76, right hemisphere 83.8
Pulvinar
nTPM: 95.0
1972 Male, age 62, unknown 117.6
1929 Male, age 48, unknown 104.2
2496 Female, age 67, right hemisphere 99.7
1899 Female, age 42, unknown 99.6
2398 Male, age 61, left hemisphere 96.4
2582 Female, age 72, unknown 95.1
1932 Male, age 80, right hemisphere 91.1
2214 Male, age 76, right hemisphere 87.6
2499 Male, age 66, unknown 84.4
2724 Male, age 74, right hemisphere 74.5
Subthalamic nucleus
nTPM: 109.7
2406 Female, age 72, unknown 196.0
2658 Male, age 74, both hemispheres 123.0
2779 Female, age 42, unknown 112.7
2275 Male, age 66, unknown 112.0
2124 Male, age 62, unknown 95.7
2282 Male, age 61, both hemispheres 85.7
2056 Female, age 72, unknown 78.6
2216 Male, age 48, unknown 73.9
Ventral posterolateral thalamic nucleus
nTPM: 88.7
2578 Male, age 74, both hemispheres 105.9
2740 Male, age 76, right hemisphere 105.9
2197 Male, age 80, both hemispheres 89.6
2397 Male, age 61, right hemisphere 86.9
2581 Female, age 72, unknown 72.5
2570 Male, age 75, right hemisphere 71.7
Ventral posteromedial thalamic nucleus
nTPM: 97.1
2653 Male, age 74, both hemispheres 140.6
2758 Male, age 80, both hemispheres 99.4
2202 Male, age 61, left hemisphere 90.4
2127 Male, age 76, right hemisphere 80.4
2281 Male, age 75, right hemisphere 74.6
Ventral thalamic nuclei
nTPM: 87.7
1845 Male, age 48, unknown 106.0
1912 Female, age 42, unknown 105.8
1860 Male, age 76, both hemispheres 93.0
2652 Male, age 74, left hemisphere 92.5
2285 Male, age 62, unknown 91.4
2291 Female, age 72, unknown 81.2
2858 Female, age 72, unknown 79.8
2204 Male, age 80, both hemispheres 77.4
2580 Male, age 66, unknown 62.1
Ventromedial nucleus
nTPM: 169.3
1982 Female, age 72, unknown 177.2
1822 Female, age 42, unknown 161.4
Zona incerta
nTPM: 81.6
2822 Male, age 74, right hemisphere 92.8
2208 Male, age 80, right hemisphere 90.7
2403 Male, age 62, unknown 84.2
2663 Female, age 72, unknown 73.6
2215 Male, age 66, unknown 66.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 111.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 111.2
FF:10154-103A1 76 years, female 111.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.6
Pig sample Sample description nTPM
Thalamus
nTPM: 93.6
Samples: 4

Max nTPM: 119.2
Min nTPM: 71.8
Sample A Female 119.2
Sample B Female 107.9
Sample C Male 71.8
Sample D Male 75.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 65.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 65.8
Samples: 4

Max nTPM: 70.5
Min nTPM: 61.3
Sample A Male 61.3
Sample B Male 67.8
Sample C Female 63.6
Sample D Female 70.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 3.4
68798085 Antisense, RP_050215_01_G03, Mouse strain C57BL/6J (56 days, male) 3.4

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