MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:132.6 nTPM
HPA:132.6 nTPM
GTEx:120.5 nTPM
FANTOM5:144.2 Scaled Tags Per Million
Pig:124.2 nTPM
Mouse:134.5 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 132.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.6
2019 Male, age 18, unknown 139.1
2828 Female, age 72, unknown 137.7
2666 Male, age 74, left hemisphere 132.1
2586 Male, age 75, left hemisphere 128.9
1827 Male, age 72, unknown 128.7
2411 Female, age 72, unknown 123.6
1833 Male, age 53, unknown 123.0
1870 Female, age 42, unknown 122.0
1830 Male, age 51, unknown 120.5
2219 Male, age 76, both hemispheres 110.7
Dorsal raphe nucleus
nTPM: 132.6
2298 Female, age 72, unknown 138.9
1828 Male, age 53, unknown 134.4
2047 Male, age 72, unknown 132.6
2016 Female, age 72, unknown 130.9
2750 Male, age 76, both hemispheres 126.2
Inferior colliculus
nTPM: 130.6
2097 Female, age 72, unknown 142.8
1890 Male, age 53, unknown 128.6
1848 Female, age 42, unknown 126.3
2849 Male, age 72, unknown 124.8
Median raphe nucleus
nTPM: 124.7
2220 Male, age 76, midline 124.7
Pedunculopontine tegmental nucleus
nTPM: 122.9
2334 Male, age 80, both hemispheres 129.7
1921 Female, age 85, both hemispheres 123.0
2338 Male, age 61, both hemispheres 116.0
Periaquaductal grey, anterior
nTPM: 131.1
2502 Female, age 75, unknown 136.0
1795 Male, age 51, unknown 131.7
1947 Male, age 18, unknown 125.5
Periaquaductal grey, dorsal
nTPM: 125.7
2850 Male, age 76, both hemispheres 132.8
1840 Male, age 53, unknown 126.9
2464 Female, age 72, unknown 124.5
1831 Male, age 72, unknown 118.6
Periaquaductal grey, lateral
nTPM: 127.4
2140 Male, age 76, both hemispheres 136.7
2272 Male, age 74, both hemispheres 123.4
2053 Male, age 18, unknown 122.2
Pretectal area
nTPM: 130.8
1817 Female, age 42, unknown 144.3
2007 Male, age 72, unknown 140.3
1816 Male, age 51, unknown 134.3
1944 Female, age 72, unknown 133.7
1815 Male, age 53, unknown 132.4
2273 Male, age 74, both hemispheres 130.1
2667 Female, age 75, unknown 128.8
2316 Male, age 76, right hemisphere 128.3
2224 Female, age 72, unknown 125.6
2825 Male, age 18, unknown 122.1
2407 Male, age 75, both hemispheres 118.9
Red nucleus
nTPM: 131.1
1954 Female, age 42, unknown 140.5
1821 Female, age 72, unknown 139.6
2785 Male, age 18, unknown 137.9
2769 Male, age 72, unknown 134.3
2227 Male, age 72, unknown 132.9
2503 Female, age 72, unknown 132.3
1904 Male, age 53, unknown 131.1
2725 Female, age 75, unknown 128.8
2588 Male, age 74, left hemisphere 127.8
1865 Male, age 51, unknown 125.6
2823 Male, age 76, right hemisphere 125.2
2584 Male, age 75, left hemisphere 116.7
Substantia nigra
nTPM: 127.3
1916 Female, age 42, unknown 144.1
1889 Female, age 72, unknown 134.8
1851 Male, age 51, unknown 133.0
2665 Male, age 74, both hemispheres 131.8
2699 Male, age 18, unknown 127.1
1941 Male, age 53, unknown 122.8
2583 Male, age 75, right hemisphere 121.8
2590 Female, age 75, unknown 121.0
2241 Male, age 72, unknown 120.6
2409 Female, age 72, unknown 115.6
Superior colliculus
nTPM: 126.0
2087 Female, age 72, unknown 131.3
2668 Female, age 75, unknown 130.3
1995 Male, age 72, unknown 128.3
1796 Male, age 53, unknown 128.1
2587 Male, age 74, left hemisphere 126.3
1839 Male, age 51, unknown 126.2
2261 Male, age 18, unknown 125.6
2664 Male, age 75, both hemispheres 122.2
1895 Male, age 76, right hemisphere 121.1
1913 Female, age 42, unknown 120.3
Ventral tegmental area
nTPM: 127.3
1915 Female, age 42, unknown 132.1
2410 Female, age 72, unknown 131.8
2021 Male, age 53, unknown 127.2
1942 Male, age 51, unknown 126.7
2218 Male, age 76, both hemispheres 124.9
2223 Female, age 72, unknown 121.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 120.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.5
Samples: 139

Max nTPM: 378.7
Min nTPM: 56.4
Std nTPM: 56.9
Median nTPM: 105.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 378.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 368.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 300.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 300.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 297.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 278.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 272.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 232.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 232.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 227.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 208.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 144.2
FF:10158-103A5 76 years, female 144.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 124.2
Pig sample Sample description nTPM
Midbrain
nTPM: 111.9
Samples: 4

Max nTPM: 123.2
Min nTPM: 94.9
Sample A Female 123.2
Sample B Female 106.8
Sample C Male 122.6
Sample D Male 94.9
Periaqueductal gray
nTPM: 101.8
Samples: 3

Max nTPM: 120.5
Min nTPM: 88.0
Sample B Female 97.0
Sample C Male 120.5
Sample D Male 88.0
Substantia nigra
nTPM: 124.2
Samples: 4

Max nTPM: 139.7
Min nTPM: 103.8
Sample A Female 135.9
Sample B Female 117.2
Sample C Male 139.7
Sample D Male 103.8
Superior colliculi
nTPM: 122.3
Samples: 4

Max nTPM: 139.9
Min nTPM: 111.1
Sample A Female 139.9
Sample B Female 118.3
Sample C Male 120.0
Sample D Male 111.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.4
Samples: 4

Max nTPM: 137.6
Min nTPM: 133.0
Sample A Male 133.3
Sample B Male 133.8
Sample C Female 133.0
Sample D Female 137.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69873971 Antisense, RP_050512_02_D06, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.