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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:813.4 nTPM
HPA:813.4 nTPM
GTEx:1046.3 nTPM
FANTOM5:62.1 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 813.4
Sample id Sample description nTPM
Amygdala
nTPM: 799.4
2695 Female, age 67, right hemisphere 837.6
2514 Male, age 75, right hemisphere 805.1
2517 Female, age 94, left hemisphere 798.4
1987 Female, age 91, left hemisphere 785.4
2814 Male, age 76, right hemisphere 770.3
Basal amygdala
nTPM: 790.1
2827 Female, age 67, right hemisphere 846.4
2609 Male, age 75, right hemisphere 807.9
2685 Female, age 94, left hemisphere 793.5
2110 Male, age 80, left hemisphere 783.3
2243 Female, age 91, right hemisphere 762.8
1955 Male, age 76, both hemispheres 747.0
Central amygdala
nTPM: 807.7
2826 Female, age 94, left hemisphere 901.7
2515 Male, age 75, right hemisphere 835.7
2239 Male, age 80, left hemisphere 777.7
2701 Female, age 91, right hemisphere 769.7
1905 Male, age 76, both hemispheres 753.7
Corticomedial amygdala
nTPM: 776.8
2428 Male, age 75, right hemisphere 811.1
2535 Female, age 67, right hemisphere 792.3
2829 Male, age 80, left hemisphere 779.5
2242 Female, age 91, right hemisphere 771.9
2429 Female, age 94, left hemisphere 761.5
2240 Male, age 76, both hemispheres 744.7
Lateral amygdala
nTPM: 813.4
2830 Female, age 67, right hemisphere 879.9
2516 Male, age 75, right hemisphere 834.7
2534 Female, age 94, left hemisphere 832.1
2256 Male, age 80, left hemisphere 796.2
2255 Female, age 91, right hemisphere 774.5
1883 Male, age 76, both hemispheres 762.7
Stria terminalis, bed nucleus
nTPM: 766.4
1974 Female, age 91, both hemispheres 775.5
2201 Male, age 74, unknown 766.9
2486 Female, age 94, both hemispheres 756.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1046.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1046.3
Samples: 152

Max nTPM: 2626.2
Min nTPM: 446.8
Std nTPM: 364.2
Median nTPM: 960.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2626.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2111.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2047.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2023.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1996.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1898.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1883.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1783.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1780.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1750.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1741.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1616.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1609.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1606.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1604.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1556.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1539.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1481.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1479.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1463.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1450.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1415.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1410.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1397.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1356.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1342.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1323.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1317.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1308.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1306.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1297.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1294.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1276.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1273.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1270.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1250.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1238.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1235.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1198.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1196.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1182.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1153.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1138.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1123.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1108.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1106.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1106.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1091.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1083.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1072.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1071.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1067.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1067.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1066.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1063.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1058.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1056.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1052.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1050.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1046.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1043.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1027.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1026.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1025.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1017.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1004.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 998.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 993.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 992.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 986.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 985.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 978.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 971.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 969.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 965.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 963.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 958.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 957.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 950.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 948.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 948.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 945.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 939.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 934.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 934.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 933.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 917.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 913.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 901.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 897.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 896.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 889.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 888.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 888.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 887.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 883.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 883.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 882.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 874.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 874.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 862.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 854.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 842.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 841.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 839.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 836.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 833.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 830.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 827.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 811.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 806.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 792.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 784.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 783.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 781.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 776.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 774.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 761.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 758.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 758.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 756.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 756.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 751.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 744.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 739.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 736.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 734.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 733.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 731.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 730.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 721.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 713.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 712.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 703.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 699.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 695.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 693.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 684.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 681.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 669.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 661.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 661.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 658.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 631.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 628.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 613.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 609.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 591.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 554.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 527.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 508.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 446.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 62.1
FF:10151-102I7 76 years, female 62.1

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