BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.1 nTPM
HPA:46.1 nTPM
GTEx:62.1 nTPM
FANTOM5:98.3 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:10.6 nTPM
Allen mouse:2.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.9
2289 Male, age 61, right hemisphere 44.5
2290 Female, age 72, unknown 43.7
2288 Male, age 75, left hemisphere 34.1
1781 Male, age 74, unknown 32.6
1854 Male, age 80, left hemisphere 32.2
1857 Female, age 85, left hemisphere 31.2
2481 Female, age 94, left hemisphere 31.1
2846 Female, age 79, unknown 29.8
Claustrum
nTPM: 38.2
2292 Female, age 85, both hemispheres 45.2
2284 Female, age 91, both hemispheres 42.0
2491 Male, age 75, both hemispheres 41.4
2568 Male, age 61, both hemispheres 41.4
2645 Female, age 72, unknown 39.3
2196 Female, age 79, unknown 36.6
2198 Male, age 80, both hemispheres 35.3
1956 Male, age 74, unknown 34.0
2392 Female, age 94, both hemispheres 28.9
Globus pallidus, externus
nTPM: 46.1
2567 Female, age 72, unknown 57.8
2646 Male, age 61, right hemisphere 55.0
1996 Male, age 80, right hemisphere 46.7
2772 Female, age 79, unknown 38.7
2395 Male, age 75, both hemispheres 32.2
Globus pallidus, internus
nTPM: 41.5
2111 Female, age 85, right hemisphere 48.6
2566 Female, age 72, unknown 46.0
1818 Male, age 74, unknown 43.0
2778 Female, age 91, both hemispheres 42.1
2037 Male, age 80, right hemisphere 38.9
2287 Male, age 75, right hemisphere 35.9
2483 Female, age 94, right hemisphere 35.8
Nucleus accumbens
nTPM: 34.8
2732 Male, age 80, right hemisphere 44.0
1806 Female, age 85, left hemisphere 37.4
1783 Male, age 74, unknown 37.3
2391 Female, age 94, left hemisphere 34.6
2698 Female, age 72, unknown 34.1
2824 Male, age 61, right hemisphere 31.6
2286 Male, age 75, left hemisphere 30.4
1856 Female, age 91, right hemisphere 29.0
Nucleus basalis of Meynert
nTPM: 38.0
2569 Male, age 61, both hemispheres 56.3
2484 Female, age 94, left hemisphere 35.7
2821 Male, age 75, both hemispheres 30.2
2393 Male, age 80, right hemisphere 29.7
Nucleus of the diagonal band
nTPM: 32.0
1979 Male, age 74, unknown 38.3
2195 Female, age 85, both hemispheres 32.6
2029 Male, age 61, right hemisphere 31.5
1812 Female, age 91, both hemispheres 31.2
2775 Male, age 80, right hemisphere 26.4
Olfactory tubercle
nTPM: 29.0
2487 Female, age 94, left hemisphere 31.1
1998 Female, age 91, both hemispheres 29.7
2856 Male, age 75, right hemisphere 27.6
1846 Male, age 80, right hemisphere 27.4
Putamen
nTPM: 37.2
2489 Female, age 72, unknown 47.5
2647 Male, age 75, left hemisphere 41.7
1829 Male, age 74, unknown 38.5
2466 Female, age 79, unknown 34.8
1838 Male, age 80, right hemisphere 34.0
2482 Female, age 94, left hemisphere 32.9
1937 Female, age 91, right hemisphere 31.3
Septal nuclei
nTPM: 32.3
2059 Female, age 85, both hemispheres 42.0
2199 Male, age 80, right hemisphere 40.0
2009 Female, age 91, both hemispheres 31.5
2394 Male, age 61, left hemisphere 30.0
1960 Male, age 74, unknown 28.9
2629 Female, age 94, right hemisphere 28.3
2031 Female, age 72, unknown 25.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 62.1
Samples: 246

Max nTPM: 117.8
Min nTPM: 13.9
Std nTPM: 16.6
Median nTPM: 61.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 117.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 106.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 102.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 101.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 99.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 98.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 95.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 94.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 94.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 93.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 91.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 61.8
Samples: 246

Max nTPM: 123.2
Min nTPM: 22.5
Std nTPM: 17.9
Median nTPM: 60.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 123.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 116.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 115.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 110.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 109.7
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 102.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 101.3
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 101.0
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 99.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 98.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 97.6
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Brain - Putamen (basal ganglia)
Average nTPM: 61.0
Samples: 205

Max nTPM: 125.2
Min nTPM: 21.6
Std nTPM: 16.2
Median nTPM: 58.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 125.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 125.1
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 117.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 110.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 95.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 94.9
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 93.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 93.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 93.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 92.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 88.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.3
FF:10164-103B2 76 years, female 98.3
Globus pallidus
Scaled Tags Per Million: 93.6
FF:10175-103C4 60 years, female 104.9
FF:10161-103A8 76 years, female 82.3
Nucleus accumbens
Scaled Tags Per Million: 68.3
FF:10037-101F1 23-56 years, mixed 68.3
Putamen
Scaled Tags Per Million: 74.2
FF:10176-103C5 60 years, female 74.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.4
Pig sample Sample description nTPM
Caudate
nTPM: 11.5
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.2
Sample A Female 10.6
Sample B Female 13.5
Sample C Male 12.8
Sample D Male 9.2
Putamen
nTPM: 11.2
Samples: 4

Max nTPM: 13.7
Min nTPM: 9.2
Sample A Female 13.7
Sample B Female 9.2
Sample C Male 10.4
Sample D Male 11.6
Septum
nTPM: 11.0
Samples: 4

Max nTPM: 12.2
Min nTPM: 9.8
Sample A Female 12.2
Sample B Female 10.3
Sample C Male 11.7
Sample D Male 9.8
Ventral pallidum
nTPM: 12.5
Samples: 4

Max nTPM: 18.7
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 12.0
Sample C Male 18.7
Sample D Male 11.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 2.7
Sample A Male 7.0
Sample B Male 7.8
Sample C Female 2.7
Sample D Female 7.2
Septum
nTPM: 10.7
Samples: 4

Max nTPM: 13.4
Min nTPM: 7.6
Sample A Male 13.4
Sample B Male 12.2
Sample C Female 9.5
Sample D Female 7.6
Ventral forebrain
nTPM: 6.0
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.6
Sample A Male 6.5
Sample B Male 7.0
Sample C Female 6.0
Sample D Female 4.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
76115733 Antisense, RP_060620_02_B12, Mouse strain C57BL/6J (56 days, male) 1.6
69736310 Antisense, RP_050503_04_E07, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 2.0
76115733 Antisense, RP_060620_02_B12, Mouse strain C57BL/6J (56 days, male) 3.3
69736310 Antisense, RP_050503_04_E07, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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