HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.6 nTPM
HPA:37.6 nTPM
GTEx:49.2 nTPM
FANTOM5:94.4 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:4.1 nTPM
Allen mouse:1.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Hippocampus
nTPM: 37.3
2529 Female, age 94, left hemisphere 46.8
1911 Female, age 85, right hemisphere 40.4
2148 Female, age 91, left hemisphere 40.1
1855 Male, age 76, left hemisphere 32.8
2621 Female, age 67, right hemisphere 32.3
1898 Male, age 80, left hemisphere 31.7
Dentate gyrus
nTPM: 37.6
2528 Male, age 74, both hemispheres 47.3
2010 Male, age 76, both hemispheres 39.5
2530 Female, age 94, left hemisphere 39.5
2531 Female, age 67, both hemispheres 35.9
2246 Female, age 85, both hemispheres 35.7
1927 Female, age 91, both hemispheres 27.7
Entorhinal gyrus
nTPM: 34.3
2117 Female, age 91, right hemisphere 45.3
2764 Male, age 80, right hemisphere 36.8
1787 Male, age 76, left hemisphere 34.2
2686 Male, age 75, right hemisphere 34.0
2613 Female, age 94, left hemisphere 28.3
1938 Female, age 85, left hemisphere 26.9
Hippocampus, CA1
nTPM: 34.4
2082 Female, age 91, right hemisphere 45.4
2527 Male, age 74, both hemispheres 37.6
1873 Female, age 85, both hemispheres 33.7
2045 Male, age 76, both hemispheres 29.6
2749 Male, age 80, left hemisphere 25.5
Hippocampus, CA2
nTPM: 36.1
2113 Female, age 91, right hemisphere 43.1
2249 Male, age 74, both hemispheres 41.9
1940 Female, age 85, left hemisphere 39.3
2437 Female, age 94, left hemisphere 36.9
1963 Male, age 80, left hemisphere 31.5
1892 Male, age 76, both hemispheres 23.9
Hippocampus, CA3
nTPM: 33.0
2861 Female, age 67, both hemispheres 40.5
2620 Female, age 94, left hemisphere 39.8
2436 Male, age 74, both hemispheres 32.4
1891 Female, age 85, both hemispheres 30.4
2137 Male, age 80, left hemisphere 30.3
1867 Male, age 76, both hemispheres 24.4
Parahippocampal cortex
nTPM: 32.2
2622 Female, age 67, right hemisphere 41.2
2245 Female, age 91, both hemispheres 37.1
2018 Male, age 76, both hemispheres 37.0
1990 Female, age 91, right hemisphere 34.3
2692 Male, age 74, both hemispheres 31.7
2532 Female, age 72, left hemisphere 31.0
2250 Female, age 67, right hemisphere 30.0
2693 Female, age 94, both hemispheres 27.7
1933 Female, age 85, both hemispheres 27.5
1850 Male, age 80, both hemispheres 24.6
Perirhinal gyrus
nTPM: 28.5
2521 Female, age 94, right hemisphere 34.0
1794 Male, age 80, right hemisphere 32.4
2848 Male, age 76, right hemisphere 27.0
1841 Female, age 85, right hemisphere 24.5
1847 Female, age 91, left hemisphere 24.5
Subiculum
nTPM: 35.8
2729 Female, age 91, right hemisphere 46.7
2042 Male, age 76, both hemispheres 38.9
2619 Male, age 74, both hemispheres 36.4
1901 Male, age 80, both hemispheres 32.1
1977 Female, age 85, both hemispheres 30.9
2438 Female, age 94, left hemisphere 29.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 49.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.2
Samples: 197

Max nTPM: 90.7
Min nTPM: 16.6
Std nTPM: 14.1
Median nTPM: 47.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 90.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 90.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 88.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 84.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 83.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 81.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 81.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 80.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 77.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 77.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 75.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 94.4
FF:10153-102I9 76 years, female 121.9
FF:10169-103B7 60 years, female 66.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.0
Samples: 4

Max nTPM: 22.2
Min nTPM: 15.0
Sample A Female 21.5
Sample B Female 22.2
Sample C Male 17.1
Sample D Male 15.0
Entorhinal cortex
nTPM: 18.0
Samples: 4

Max nTPM: 21.5
Min nTPM: 15.1
Sample A Female 20.2
Sample B Female 15.1
Sample C Male 21.5
Sample D Male 15.3
Subiculum
nTPM: 19.3
Samples: 4

Max nTPM: 24.8
Min nTPM: 14.9
Sample A Female 24.8
Sample B Female 16.4
Sample C Male 20.9
Sample D Male 14.9
Ventral hippocampus
nTPM: 23.1
Samples: 4

Max nTPM: 31.1
Min nTPM: 16.5
Sample A Female 18.4
Sample B Female 16.5
Sample C Male 31.1
Sample D Male 26.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.6
Sample A Male 3.6
Sample B Male 3.7
Sample C Female 3.6
Sample D Female 5.3
Hippocampal formation
nTPM: 4.0
Samples: 4

Max nTPM: 5.5
Min nTPM: 2.5
Sample A Male 2.5
Sample B Male 3.5
Sample C Female 4.3
Sample D Female 5.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
76115733 Antisense, RP_060620_02_B12, Mouse strain C57BL/6J (56 days, male) 1.5
69736310 Antisense, RP_050503_04_E07, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.