MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.4 nTPM
HPA:31.4 nTPM
GTEx:31.6 nTPM
FANTOM5:111.9 Scaled Tags Per Million
Pig:43.7 nTPM
Mouse:51.6 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2019 Male, age 18, unknown 35.5
2586 Male, age 75, left hemisphere 28.3
2666 Male, age 74, left hemisphere 26.7
2411 Female, age 72, unknown 26.3
1827 Male, age 72, unknown 26.0
2219 Male, age 76, both hemispheres 25.7
1870 Female, age 42, unknown 25.6
1833 Male, age 53, unknown 24.7
1830 Male, age 51, unknown 24.1
2828 Female, age 72, unknown 24.0
Dorsal raphe nucleus
nTPM: 24.9
2298 Female, age 72, unknown 26.4
1828 Male, age 53, unknown 25.7
2016 Female, age 72, unknown 24.3
2750 Male, age 76, both hemispheres 24.3
2047 Male, age 72, unknown 24.0
Inferior colliculus
nTPM: 25.9
2097 Female, age 72, unknown 28.7
1890 Male, age 53, unknown 26.4
1848 Female, age 42, unknown 24.7
2849 Male, age 72, unknown 23.8
Median raphe nucleus
nTPM: 24.8
2220 Male, age 76, midline 24.8
Pedunculopontine tegmental nucleus
nTPM: 24.6
1921 Female, age 85, both hemispheres 25.8
2334 Male, age 80, both hemispheres 25.0
2338 Male, age 61, both hemispheres 23.0
Periaquaductal grey, anterior
nTPM: 25.7
2502 Female, age 75, unknown 27.8
1795 Male, age 51, unknown 25.3
1947 Male, age 18, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 25.1
2464 Female, age 72, unknown 26.2
1831 Male, age 72, unknown 25.4
1840 Male, age 53, unknown 24.7
2850 Male, age 76, both hemispheres 24.0
Periaquaductal grey, lateral
nTPM: 24.3
2272 Male, age 74, both hemispheres 25.0
2053 Male, age 18, unknown 24.0
2140 Male, age 76, both hemispheres 23.7
Pretectal area
nTPM: 31.4
1817 Female, age 42, unknown 40.2
1944 Female, age 72, unknown 40.1
1816 Male, age 51, unknown 39.3
2007 Male, age 72, unknown 38.3
1815 Male, age 53, unknown 37.6
2667 Female, age 75, unknown 26.7
2273 Male, age 74, both hemispheres 26.6
2224 Female, age 72, unknown 26.5
2407 Male, age 75, both hemispheres 24.8
2316 Male, age 76, right hemisphere 23.0
2825 Male, age 18, unknown 22.7
Red nucleus
nTPM: 26.7
2785 Male, age 18, unknown 34.1
1821 Female, age 72, unknown 28.1
2503 Female, age 72, unknown 27.2
2588 Male, age 74, left hemisphere 27.0
1865 Male, age 51, unknown 26.5
2584 Male, age 75, left hemisphere 26.4
2823 Male, age 76, right hemisphere 26.0
2725 Female, age 75, unknown 25.8
1904 Male, age 53, unknown 25.7
1954 Female, age 42, unknown 24.9
2227 Male, age 72, unknown 24.7
2769 Male, age 72, unknown 24.7
Substantia nigra
nTPM: 27.9
1889 Female, age 72, unknown 35.1
2241 Male, age 72, unknown 29.5
1941 Male, age 53, unknown 28.5
1851 Male, age 51, unknown 28.3
1916 Female, age 42, unknown 27.7
2583 Male, age 75, right hemisphere 27.7
2590 Female, age 75, unknown 26.7
2409 Female, age 72, unknown 26.4
2665 Male, age 74, both hemispheres 25.4
2699 Male, age 18, unknown 23.8
Superior colliculus
nTPM: 28.5
2087 Female, age 72, unknown 34.5
2668 Female, age 75, unknown 31.4
2261 Male, age 18, unknown 29.2
1995 Male, age 72, unknown 28.9
1913 Female, age 42, unknown 28.8
2664 Male, age 75, both hemispheres 28.5
2587 Male, age 74, left hemisphere 26.6
1796 Male, age 53, unknown 26.2
1895 Male, age 76, right hemisphere 25.5
1839 Male, age 51, unknown 25.3
Ventral tegmental area
nTPM: 25.3
2410 Female, age 72, unknown 28.1
2218 Male, age 76, both hemispheres 25.3
2223 Female, age 72, unknown 25.3
1915 Female, age 42, unknown 25.0
1942 Male, age 51, unknown 24.9
2021 Male, age 53, unknown 23.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.6
Samples: 139

Max nTPM: 51.1
Min nTPM: 20.9
Std nTPM: 6.0
Median nTPM: 30.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 51.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 48.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 46.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 45.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 45.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 44.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 43.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 42.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 42.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 41.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.9
FF:10158-103A5 76 years, female 111.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.7
Pig sample Sample description nTPM
Midbrain
nTPM: 43.7
Samples: 4

Max nTPM: 56.7
Min nTPM: 36.2
Sample A Female 56.7
Sample B Female 36.2
Sample C Male 44.6
Sample D Male 37.2
Periaqueductal gray
nTPM: 32.8
Samples: 3

Max nTPM: 38.3
Min nTPM: 28.5
Sample B Female 28.5
Sample C Male 38.3
Sample D Male 31.7
Substantia nigra
nTPM: 40.1
Samples: 4

Max nTPM: 46.3
Min nTPM: 28.0
Sample A Female 46.3
Sample B Female 28.0
Sample C Male 44.3
Sample D Male 41.9
Superior colliculi
nTPM: 38.8
Samples: 4

Max nTPM: 45.1
Min nTPM: 29.9
Sample A Female 40.8
Sample B Female 29.9
Sample C Male 45.1
Sample D Male 39.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.6
Samples: 4

Max nTPM: 54.0
Min nTPM: 48.5
Sample A Male 54.0
Sample B Male 48.5
Sample C Female 50.0
Sample D Female 53.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
69817880 Antisense, RP_050510_03_H07, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.