MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:490.3 nTPM
HPA:490.3 nTPM
GTEx:441.5 nTPM
FANTOM5:1436.4 Scaled Tags Per Million
Mouse:288.6 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 490.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 433.5
1830 Male, age 51, unknown 594.1
1833 Male, age 53, unknown 530.5
2411 Female, age 72, unknown 482.2
2019 Male, age 18, unknown 441.2
1870 Female, age 42, unknown 438.3
2219 Male, age 76, both hemispheres 404.5
2828 Female, age 72, unknown 395.2
2586 Male, age 75, left hemisphere 376.3
2666 Male, age 74, left hemisphere 351.2
1827 Male, age 72, unknown 321.7
Dorsal raphe nucleus
nTPM: 325.1
2750 Male, age 76, both hemispheres 600.3
2016 Female, age 72, unknown 325.3
1828 Male, age 53, unknown 300.9
2047 Male, age 72, unknown 214.4
2298 Female, age 72, unknown 184.5
Inferior colliculus
nTPM: 276.0
2849 Male, age 72, unknown 302.7
1848 Female, age 42, unknown 293.9
1890 Male, age 53, unknown 291.0
2097 Female, age 72, unknown 216.6
Median raphe nucleus
nTPM: 335.9
2220 Male, age 76, midline 335.9
Pedunculopontine tegmental nucleus
nTPM: 426.7
2338 Male, age 61, both hemispheres 470.9
2334 Male, age 80, both hemispheres 466.8
1921 Female, age 85, both hemispheres 342.5
Periaquaductal grey, anterior
nTPM: 252.9
2502 Female, age 75, unknown 285.8
1947 Male, age 18, unknown 255.2
1795 Male, age 51, unknown 217.6
Periaquaductal grey, dorsal
nTPM: 223.5
2464 Female, age 72, unknown 314.8
1831 Male, age 72, unknown 258.8
2850 Male, age 76, both hemispheres 165.6
1840 Male, age 53, unknown 154.9
Periaquaductal grey, lateral
nTPM: 232.7
2053 Male, age 18, unknown 271.3
2272 Male, age 74, both hemispheres 256.1
2140 Male, age 76, both hemispheres 170.8
Pretectal area
nTPM: 269.1
2316 Male, age 76, right hemisphere 374.1
2407 Male, age 75, both hemispheres 350.2
1815 Male, age 53, unknown 344.4
2825 Male, age 18, unknown 298.7
1817 Female, age 42, unknown 277.7
2007 Male, age 72, unknown 265.1
2224 Female, age 72, unknown 233.3
2273 Male, age 74, both hemispheres 220.9
2667 Female, age 75, unknown 206.2
1944 Female, age 72, unknown 204.9
1816 Male, age 51, unknown 185.1
Red nucleus
nTPM: 490.3
1865 Male, age 51, unknown 579.2
2503 Female, age 72, unknown 543.8
2227 Male, age 72, unknown 532.0
1904 Male, age 53, unknown 521.3
2588 Male, age 74, left hemisphere 519.3
1821 Female, age 72, unknown 497.8
2769 Male, age 72, unknown 497.7
2823 Male, age 76, right hemisphere 492.4
2785 Male, age 18, unknown 491.5
1954 Female, age 42, unknown 433.6
2725 Female, age 75, unknown 389.5
2584 Male, age 75, left hemisphere 385.8
Substantia nigra
nTPM: 317.3
2590 Female, age 75, unknown 390.1
2583 Male, age 75, right hemisphere 381.4
1851 Male, age 51, unknown 341.1
2699 Male, age 18, unknown 341.1
1889 Female, age 72, unknown 329.4
2665 Male, age 74, both hemispheres 323.0
2409 Female, age 72, unknown 297.5
1941 Male, age 53, unknown 292.1
1916 Female, age 42, unknown 239.9
2241 Male, age 72, unknown 236.9
Superior colliculus
nTPM: 353.6
1913 Female, age 42, unknown 533.5
1995 Male, age 72, unknown 505.1
1839 Male, age 51, unknown 382.8
2587 Male, age 74, left hemisphere 376.9
2668 Female, age 75, unknown 371.5
1895 Male, age 76, right hemisphere 360.4
1796 Male, age 53, unknown 298.6
2664 Male, age 75, both hemispheres 265.1
2087 Female, age 72, unknown 234.6
2261 Male, age 18, unknown 207.1
Ventral tegmental area
nTPM: 394.0
2223 Female, age 72, unknown 655.7
2410 Female, age 72, unknown 381.4
2218 Male, age 76, both hemispheres 355.6
2021 Male, age 53, unknown 347.9
1942 Male, age 51, unknown 341.6
1915 Female, age 42, unknown 282.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 441.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 441.5
Samples: 139

Max nTPM: 1924.8
Min nTPM: 76.2
Std nTPM: 282.8
Median nTPM: 359.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1924.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1477.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1208.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1125.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1099.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1058.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1049.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 980.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 884.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 862.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 838.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1436.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1436.4
FF:10158-103A5 76 years, female 1436.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 288.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 288.7
Samples: 4

Max nTPM: 345.8
Min nTPM: 216.4
Sample A Male 272.3
Sample B Male 216.4
Sample C Female 345.8
Sample D Female 320.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
69201510 Antisense, RP_050317_03_A10, Mouse strain C57BL/6J (56 days, male) 10.1
69174034 Antisense, RP_050329_01_H11, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.