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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:565.7 nTPM
HPA:565.7 nTPM
GTEx:1121.4 nTPM
FANTOM5:1855.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 565.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 413.0
2816 Male, age 47, midline 465.4
1981 Female, age 72, midline 436.4
2194 Female, age 79, both hemispheres 422.3
2565 Male, age 75, midline 379.6
2048 Male, age 55, midline 361.5
Cervical spinal cord, dorsal horn
nTPM: 447.8
2296 Male, age 66, both hemispheres 697.9
2173 Female, age 72, unknown 604.1
1877 Male, age 55, unknown 403.8
2069 Male, age 47, both hemispheres 396.8
2297 Male, age 75, both hemispheres 310.2
2721 Male, age 90, both hemispheres 274.1
Cervical spinal cord, ventral horn
nTPM: 565.7
2809 Male, age 90, both hemispheres 664.9
2480 Male, age 75, both hemispheres 614.0
2068 Male, age 55, unknown 591.4
2295 Male, age 66, both hemispheres 553.7
2820 Female, age 79, both hemispheres 539.1
2098 Female, age 72, unknown 431.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1121.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1121.4
Samples: 159

Max nTPM: 2651.8
Min nTPM: 235.5
Std nTPM: 440.6
Median nTPM: 1078.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2651.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2430.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2266.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2105.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2087.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1998.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1953.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1935.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1898.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1890.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1863.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1847.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1775.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1773.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1745.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1739.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1719.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1717.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1711.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1696.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1605.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1594.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1589.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1572.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1571.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1565.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1558.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1509.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1496.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1483.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1477.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1472.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1464.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1452.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1445.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1438.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1411.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1397.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1390.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1387.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1382.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1374.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1374.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1374.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1355.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1354.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1339.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1328.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1316.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1294.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1276.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1246.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1240.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1221.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1206.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1192.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1186.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1185.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1175.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1175.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1172.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1166.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1163.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1156.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1144.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1142.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1140.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1138.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1134.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1128.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1119.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1114.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1109.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1107.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1102.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1101.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1094.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1089.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1086.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1078.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1077.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1057.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1055.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1052.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1049.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1034.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1033.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1029.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1016.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1007.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1003.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1002.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 992.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 978.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 977.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 972.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 959.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 952.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 947.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 942.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 938.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 935.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 933.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 931.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 927.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 926.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 919.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 908.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 908.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 904.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 898.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 891.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 885.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 884.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 876.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 866.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 863.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 862.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 841.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 837.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 829.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 800.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 799.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 776.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 757.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 728.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 724.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 721.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 721.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 715.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 703.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 701.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 684.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 676.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 676.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 668.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 665.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 664.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 635.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 628.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 625.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 623.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 609.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 576.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 565.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 561.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 559.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 514.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 508.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 500.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 472.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 460.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 457.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 443.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 377.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 371.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 357.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 336.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 235.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1855.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1855.4
FF:10181-103D1 60 years, female 2160.7
FF:10159-103A6 76 years, female 1550.0

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