BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:41.9 nTPM
HPA:41.9 nTPM
GTEx:45.3 nTPM
FANTOM5:33.5 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:51.3 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041868Antibody HPA041949
Glial cells Not detectedNot detected
Neuronal cells MediumHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.1
1857 Female, age 85, left hemisphere 42.8
2481 Female, age 94, left hemisphere 42.8
2290 Female, age 72, unknown 42.3
2288 Male, age 75, left hemisphere 41.3
1854 Male, age 80, left hemisphere 40.4
1781 Male, age 74, unknown 40.3
2846 Female, age 79, unknown 40.1
2289 Male, age 61, right hemisphere 39.2
Claustrum
nTPM: 39.8
1956 Male, age 74, unknown 41.6
2198 Male, age 80, both hemispheres 41.3
2392 Female, age 94, both hemispheres 40.6
2491 Male, age 75, both hemispheres 40.6
2196 Female, age 79, unknown 39.2
2284 Female, age 91, both hemispheres 39.1
2568 Male, age 61, both hemispheres 39.0
2292 Female, age 85, both hemispheres 38.4
2645 Female, age 72, unknown 38.3
Globus pallidus, externus
nTPM: 41.9
2772 Female, age 79, unknown 44.8
1996 Male, age 80, right hemisphere 42.9
2395 Male, age 75, both hemispheres 42.6
2646 Male, age 61, right hemisphere 41.4
2567 Female, age 72, unknown 37.9
Globus pallidus, internus
nTPM: 41.7
2483 Female, age 94, right hemisphere 43.7
2287 Male, age 75, right hemisphere 43.5
2037 Male, age 80, right hemisphere 42.3
2778 Female, age 91, both hemispheres 41.6
1818 Male, age 74, unknown 41.0
2111 Female, age 85, right hemisphere 40.6
2566 Female, age 72, unknown 39.6
Nucleus accumbens
nTPM: 41.1
2286 Male, age 75, left hemisphere 42.7
1806 Female, age 85, left hemisphere 42.0
1856 Female, age 91, right hemisphere 41.7
2391 Female, age 94, left hemisphere 41.1
1783 Male, age 74, unknown 40.6
2732 Male, age 80, right hemisphere 40.5
2698 Female, age 72, unknown 40.2
2824 Male, age 61, right hemisphere 40.1
Nucleus basalis of Meynert
nTPM: 41.0
2393 Male, age 80, right hemisphere 41.6
2484 Female, age 94, left hemisphere 41.4
2821 Male, age 75, both hemispheres 40.9
2569 Male, age 61, both hemispheres 40.1
Nucleus of the diagonal band
nTPM: 41.7
1812 Female, age 91, both hemispheres 42.8
2029 Male, age 61, right hemisphere 42.2
2775 Male, age 80, right hemisphere 41.5
2195 Female, age 85, both hemispheres 41.3
1979 Male, age 74, unknown 40.5
Olfactory tubercle
nTPM: 40.4
1998 Female, age 91, both hemispheres 41.8
1846 Male, age 80, right hemisphere 40.7
2856 Male, age 75, right hemisphere 39.8
2487 Female, age 94, left hemisphere 39.3
Putamen
nTPM: 40.6
2482 Female, age 94, left hemisphere 41.8
1937 Female, age 91, right hemisphere 41.6
2466 Female, age 79, unknown 41.5
1838 Male, age 80, right hemisphere 40.7
2647 Male, age 75, left hemisphere 40.1
1829 Male, age 74, unknown 39.5
2489 Female, age 72, unknown 38.7
Septal nuclei
nTPM: 41.1
2031 Female, age 72, unknown 43.7
1960 Male, age 74, unknown 43.6
2059 Female, age 85, both hemispheres 41.6
2009 Female, age 91, both hemispheres 40.0
2394 Male, age 61, left hemisphere 39.6
2199 Male, age 80, right hemisphere 39.5
2629 Female, age 94, right hemisphere 39.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.2
Samples: 246

Max nTPM: 81.7
Min nTPM: 16.3
Std nTPM: 9.5
Median nTPM: 38.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 81.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 80.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 73.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 69.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 68.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 67.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 64.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 62.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 61.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 58.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 58.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.7
Samples: 246

Max nTPM: 107.0
Min nTPM: 20.2
Std nTPM: 11.5
Median nTPM: 40.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 107.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 95.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 89.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 85.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 68.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 67.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 66.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 65.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 65.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 65.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 62.2
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Brain - Putamen (basal ganglia)
Average nTPM: 45.3
Samples: 205

Max nTPM: 95.7
Min nTPM: 25.3
Std nTPM: 9.6
Median nTPM: 44.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 95.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 76.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 76.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 71.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 69.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 69.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 67.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 65.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 64.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 63.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 61.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.3
FF:10164-103B2 76 years, female 30.3
Globus pallidus
Scaled Tags Per Million: 29.1
FF:10175-103C4 60 years, female 31.5
FF:10161-103A8 76 years, female 26.7
Nucleus accumbens
Scaled Tags Per Million: 28.4
FF:10037-101F1 23-56 years, mixed 28.4
Putamen
Scaled Tags Per Million: 33.5
FF:10176-103C5 60 years, female 33.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Caudate
nTPM: 12.2
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.9
Sample A Female 10.9
Sample B Female 12.0
Sample C Male 12.7
Sample D Male 13.3
Putamen
nTPM: 11.7
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.2
Sample A Female 11.8
Sample B Female 11.4
Sample C Male 10.2
Sample D Male 13.3
Septum
nTPM: 12.0
Samples: 4

Max nTPM: 12.6
Min nTPM: 11.1
Sample A Female 11.7
Sample B Female 12.6
Sample C Male 11.1
Sample D Male 12.4
Ventral pallidum
nTPM: 12.3
Samples: 4

Max nTPM: 13.5
Min nTPM: 11.1
Sample A Female 11.1
Sample B Female 12.2
Sample C Male 12.4
Sample D Male 13.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 51.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.1
Samples: 4

Max nTPM: 48.0
Min nTPM: 37.0
Sample A Male 48.0
Sample B Male 37.0
Sample C Female 40.1
Sample D Female 43.2
Septum
nTPM: 51.3
Samples: 4

Max nTPM: 62.6
Min nTPM: 39.4
Sample A Male 39.4
Sample B Male 56.3
Sample C Female 62.6
Sample D Female 46.9
Ventral forebrain
nTPM: 48.5
Samples: 4

Max nTPM: 55.8
Min nTPM: 42.0
Sample A Male 42.0
Sample B Male 44.2
Sample C Female 55.8
Sample D Female 51.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69015745 Antisense, RP_050315_01_F04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
69015745 Antisense, RP_050315_01_F04, Mouse strain C57BL/6J (56 days, male) 0.2

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