MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.6 nTPM
HPA:44.6 nTPM
GTEx:48.5 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:11.1 nTPM
Mouse:45.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.2
1827 Male, age 72, unknown 43.8
2828 Female, age 72, unknown 43.4
2019 Male, age 18, unknown 42.8
2586 Male, age 75, left hemisphere 42.8
2411 Female, age 72, unknown 42.0
2219 Male, age 76, both hemispheres 41.9
2666 Male, age 74, left hemisphere 41.8
1870 Female, age 42, unknown 41.7
1830 Male, age 51, unknown 41.0
1833 Male, age 53, unknown 40.9
Dorsal raphe nucleus
nTPM: 42.8
2298 Female, age 72, unknown 44.9
2047 Male, age 72, unknown 43.0
2750 Male, age 76, both hemispheres 42.3
1828 Male, age 53, unknown 42.0
2016 Female, age 72, unknown 41.6
Inferior colliculus
nTPM: 41.3
2097 Female, age 72, unknown 44.0
1890 Male, age 53, unknown 41.3
1848 Female, age 42, unknown 40.4
2849 Male, age 72, unknown 39.2
Median raphe nucleus
nTPM: 43.0
2220 Male, age 76, midline 43.0
Pedunculopontine tegmental nucleus
nTPM: 41.8
2334 Male, age 80, both hemispheres 42.3
1921 Female, age 85, both hemispheres 42.1
2338 Male, age 61, both hemispheres 41.0
Periaquaductal grey, anterior
nTPM: 43.1
2502 Female, age 75, unknown 43.7
1947 Male, age 18, unknown 42.9
1795 Male, age 51, unknown 42.8
Periaquaductal grey, dorsal
nTPM: 41.0
1840 Male, age 53, unknown 41.6
2464 Female, age 72, unknown 41.5
1831 Male, age 72, unknown 40.8
2850 Male, age 76, both hemispheres 39.9
Periaquaductal grey, lateral
nTPM: 41.0
2140 Male, age 76, both hemispheres 41.3
2053 Male, age 18, unknown 41.1
2272 Male, age 74, both hemispheres 40.6
Pretectal area
nTPM: 42.9
1944 Female, age 72, unknown 44.1
2667 Female, age 75, unknown 44.0
1816 Male, age 51, unknown 43.9
1817 Female, age 42, unknown 43.8
2007 Male, age 72, unknown 43.8
1815 Male, age 53, unknown 43.1
2224 Female, age 72, unknown 42.6
2273 Male, age 74, both hemispheres 42.4
2316 Male, age 76, right hemisphere 42.4
2825 Male, age 18, unknown 41.2
2407 Male, age 75, both hemispheres 40.7
Red nucleus
nTPM: 41.6
2725 Female, age 75, unknown 42.6
1821 Female, age 72, unknown 42.5
2503 Female, age 72, unknown 42.1
2785 Male, age 18, unknown 42.1
1904 Male, age 53, unknown 41.8
2584 Male, age 75, left hemisphere 41.8
2769 Male, age 72, unknown 41.7
1954 Female, age 42, unknown 41.6
2227 Male, age 72, unknown 40.8
2823 Male, age 76, right hemisphere 40.8
1865 Male, age 51, unknown 40.7
2588 Male, age 74, left hemisphere 40.2
Substantia nigra
nTPM: 44.6
1916 Female, age 42, unknown 49.8
1851 Male, age 51, unknown 47.8
2241 Male, age 72, unknown 46.0
1941 Male, age 53, unknown 45.6
2409 Female, age 72, unknown 43.6
2665 Male, age 74, both hemispheres 43.4
2583 Male, age 75, right hemisphere 43.3
2699 Male, age 18, unknown 43.3
1889 Female, age 72, unknown 42.9
2590 Female, age 75, unknown 40.7
Superior colliculus
nTPM: 41.7
2261 Male, age 18, unknown 43.3
2668 Female, age 75, unknown 42.6
1796 Male, age 53, unknown 42.4
1895 Male, age 76, right hemisphere 42.1
2087 Female, age 72, unknown 42.1
2664 Male, age 75, both hemispheres 41.8
2587 Male, age 74, left hemisphere 41.0
1995 Male, age 72, unknown 40.8
1839 Male, age 51, unknown 40.6
1913 Female, age 42, unknown 40.3
Ventral tegmental area
nTPM: 43.3
1915 Female, age 42, unknown 46.5
2218 Male, age 76, both hemispheres 43.9
1942 Male, age 51, unknown 43.4
2410 Female, age 72, unknown 43.4
2021 Male, age 53, unknown 42.0
2223 Female, age 72, unknown 40.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.5
Samples: 139

Max nTPM: 102.2
Min nTPM: 21.7
Std nTPM: 12.9
Median nTPM: 46.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 102.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 80.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 77.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 77.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 73.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 72.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 70.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 70.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 69.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 69.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.6
FF:10158-103A5 76 years, female 34.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.1
Pig sample Sample description nTPM
Midbrain
nTPM: 11.0
Samples: 4

Max nTPM: 12.3
Min nTPM: 9.6
Sample A Female 10.9
Sample B Female 11.0
Sample C Male 9.6
Sample D Male 12.3
Periaqueductal gray
nTPM: 11.1
Samples: 3

Max nTPM: 11.6
Min nTPM: 10.4
Sample B Female 10.4
Sample C Male 11.3
Sample D Male 11.6
Substantia nigra
nTPM: 11.1
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.5
Sample A Female 10.4
Sample B Female 9.5
Sample C Male 11.3
Sample D Male 13.3
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.8
Sample A Female 9.8
Sample B Female 10.4
Sample C Male 11.2
Sample D Male 12.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.9
Samples: 4

Max nTPM: 47.0
Min nTPM: 44.3
Sample A Male 46.2
Sample B Male 46.2
Sample C Female 47.0
Sample D Female 44.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69015745 Antisense, RP_050315_01_F04, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.