BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.2 nTPM
HPA:37.2 nTPM
GTEx:19.9 nTPM
FANTOM5:79.8 Scaled Tags Per Million
Pig:51.7 nTPM
Mouse:60.0 nTPM
Allen mouse:5.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 26.5
2288 Male, age 75, left hemisphere 32.8
1781 Male, age 74, unknown 31.8
2481 Female, age 94, left hemisphere 26.6
2846 Female, age 79, unknown 26.3
1854 Male, age 80, left hemisphere 24.3
1857 Female, age 85, left hemisphere 23.6
2289 Male, age 61, right hemisphere 23.4
2290 Female, age 72, unknown 23.4
Claustrum
nTPM: 33.9
1956 Male, age 74, unknown 38.7
2392 Female, age 94, both hemispheres 37.0
2491 Male, age 75, both hemispheres 36.0
2292 Female, age 85, both hemispheres 35.4
2568 Male, age 61, both hemispheres 35.2
2198 Male, age 80, both hemispheres 31.6
2645 Female, age 72, unknown 31.4
2284 Female, age 91, both hemispheres 30.6
2196 Female, age 79, unknown 29.2
Globus pallidus, externus
nTPM: 33.2
2395 Male, age 75, both hemispheres 39.1
2772 Female, age 79, unknown 33.4
2646 Male, age 61, right hemisphere 33.0
2567 Female, age 72, unknown 30.5
1996 Male, age 80, right hemisphere 30.1
Globus pallidus, internus
nTPM: 32.9
2287 Male, age 75, right hemisphere 40.1
2778 Female, age 91, both hemispheres 36.8
2111 Female, age 85, right hemisphere 34.4
2483 Female, age 94, right hemisphere 32.4
2566 Female, age 72, unknown 30.0
1818 Male, age 74, unknown 28.7
2037 Male, age 80, right hemisphere 27.6
Nucleus accumbens
nTPM: 28.4
2286 Male, age 75, left hemisphere 33.1
2391 Female, age 94, left hemisphere 32.4
2824 Male, age 61, right hemisphere 29.4
1783 Male, age 74, unknown 28.1
2698 Female, age 72, unknown 27.9
1856 Female, age 91, right hemisphere 26.3
1806 Female, age 85, left hemisphere 25.7
2732 Male, age 80, right hemisphere 24.7
Nucleus basalis of Meynert
nTPM: 28.4
2569 Male, age 61, both hemispheres 32.8
2821 Male, age 75, both hemispheres 28.1
2484 Female, age 94, left hemisphere 26.8
2393 Male, age 80, right hemisphere 25.9
Nucleus of the diagonal band
nTPM: 35.5
2029 Male, age 61, right hemisphere 43.3
2775 Male, age 80, right hemisphere 39.3
1812 Female, age 91, both hemispheres 38.5
2195 Female, age 85, both hemispheres 35.0
1979 Male, age 74, unknown 21.5
Olfactory tubercle
nTPM: 37.2
1998 Female, age 91, both hemispheres 42.0
1846 Male, age 80, right hemisphere 39.0
2487 Female, age 94, left hemisphere 35.8
2856 Male, age 75, right hemisphere 31.8
Putamen
nTPM: 27.3
2647 Male, age 75, left hemisphere 36.0
1829 Male, age 74, unknown 27.2
1937 Female, age 91, right hemisphere 26.9
2482 Female, age 94, left hemisphere 26.6
2466 Female, age 79, unknown 25.9
1838 Male, age 80, right hemisphere 25.6
2489 Female, age 72, unknown 23.1
Septal nuclei
nTPM: 33.7
1960 Male, age 74, unknown 45.2
2031 Female, age 72, unknown 43.9
2009 Female, age 91, both hemispheres 34.0
2629 Female, age 94, right hemisphere 33.3
2059 Female, age 85, both hemispheres 30.7
2394 Male, age 61, left hemisphere 27.3
2199 Male, age 80, right hemisphere 21.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.0
Samples: 246

Max nTPM: 51.0
Min nTPM: 6.1
Std nTPM: 4.8
Median nTPM: 18.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 51.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 29.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 28.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 28.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 28.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 28.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 28.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 27.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 27.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 27.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 27.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.9
Samples: 246

Max nTPM: 42.9
Min nTPM: 3.8
Std nTPM: 7.2
Median nTPM: 20.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 42.9
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 35.7
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 34.2
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 33.6
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 33.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 32.8
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 32.1
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 31.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 31.5
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 31.3
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 30.9
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Brain - Putamen (basal ganglia)
Average nTPM: 19.2
Samples: 205

Max nTPM: 34.2
Min nTPM: 4.7
Std nTPM: 5.1
Median nTPM: 19.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 34.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 31.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 30.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 29.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 29.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 29.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 28.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 28.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 28.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 28.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 27.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.8
FF:10164-103B2 76 years, female 41.8
Globus pallidus
Scaled Tags Per Million: 65.1
FF:10175-103C4 60 years, female 70.2
FF:10161-103A8 76 years, female 59.9
Nucleus accumbens
Scaled Tags Per Million: 79.8
FF:10037-101F1 23-56 years, mixed 79.8
Putamen
Scaled Tags Per Million: 43.4
FF:10176-103C5 60 years, female 43.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 51.7
Pig sample Sample description nTPM
Caudate
nTPM: 39.4
Samples: 4

Max nTPM: 49.0
Min nTPM: 30.7
Sample A Female 30.7
Sample B Female 37.6
Sample C Male 49.0
Sample D Male 40.3
Putamen
nTPM: 51.7
Samples: 4

Max nTPM: 74.1
Min nTPM: 42.4
Sample A Female 42.4
Sample B Female 44.1
Sample C Male 74.1
Sample D Male 46.1
Septum
nTPM: 31.5
Samples: 4

Max nTPM: 33.7
Min nTPM: 27.2
Sample A Female 33.7
Sample B Female 33.6
Sample C Male 31.6
Sample D Male 27.2
Ventral pallidum
nTPM: 35.5
Samples: 4

Max nTPM: 40.9
Min nTPM: 31.2
Sample A Female 31.3
Sample B Female 40.9
Sample C Male 38.4
Sample D Male 31.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 48.0
Samples: 4

Max nTPM: 57.3
Min nTPM: 40.9
Sample A Male 42.1
Sample B Male 40.9
Sample C Female 57.3
Sample D Female 51.8
Septum
nTPM: 43.6
Samples: 4

Max nTPM: 45.3
Min nTPM: 41.8
Sample A Male 41.8
Sample B Male 43.8
Sample C Female 45.3
Sample D Female 43.3
Ventral forebrain
nTPM: 60.0
Samples: 4

Max nTPM: 63.6
Min nTPM: 56.1
Sample A Male 56.1
Sample B Male 61.4
Sample C Female 58.8
Sample D Female 63.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.0
74657928 Antisense, RP_060220_02_F07, Mouse strain C57BL/6J (56 days, male) 5.4
69549628 Antisense, RP_050301_01_D11, Mouse strain C57BL/6J (56 days, male) 4.7
Pallidum
Expression energy: 3.4
74657928 Antisense, RP_060220_02_F07, Mouse strain C57BL/6J (56 days, male) 3.7
69549628 Antisense, RP_050301_01_D11, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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