MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:71.4 nTPM
HPA:71.4 nTPM
GTEx:85.8 nTPM
FANTOM5:14.6 Scaled Tags Per Million
Pig:10.0 nTPM
Mouse:9.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.2
2586 Male, age 75, left hemisphere 72.9
2828 Female, age 72, unknown 72.8
1870 Female, age 42, unknown 71.5
2666 Male, age 74, left hemisphere 70.5
1833 Male, age 53, unknown 68.4
1830 Male, age 51, unknown 68.1
2019 Male, age 18, unknown 68.1
1827 Male, age 72, unknown 67.3
2411 Female, age 72, unknown 66.9
2219 Male, age 76, both hemispheres 65.0
Dorsal raphe nucleus
nTPM: 70.2
2016 Female, age 72, unknown 72.5
1828 Male, age 53, unknown 70.8
2047 Male, age 72, unknown 69.8
2298 Female, age 72, unknown 69.8
2750 Male, age 76, both hemispheres 68.2
Inferior colliculus
nTPM: 69.8
1890 Male, age 53, unknown 70.9
1848 Female, age 42, unknown 70.6
2849 Male, age 72, unknown 69.5
2097 Female, age 72, unknown 68.0
Median raphe nucleus
nTPM: 68.5
2220 Male, age 76, midline 68.5
Pedunculopontine tegmental nucleus
nTPM: 70.3
2338 Male, age 61, both hemispheres 72.6
2334 Male, age 80, both hemispheres 70.5
1921 Female, age 85, both hemispheres 67.9
Periaquaductal grey, anterior
nTPM: 69.9
2502 Female, age 75, unknown 71.4
1795 Male, age 51, unknown 69.8
1947 Male, age 18, unknown 68.4
Periaquaductal grey, dorsal
nTPM: 70.8
2850 Male, age 76, both hemispheres 73.5
1831 Male, age 72, unknown 71.5
1840 Male, age 53, unknown 70.0
2464 Female, age 72, unknown 68.2
Periaquaductal grey, lateral
nTPM: 71.1
2053 Male, age 18, unknown 73.3
2140 Male, age 76, both hemispheres 72.2
2272 Male, age 74, both hemispheres 67.8
Pretectal area
nTPM: 68.1
2316 Male, age 76, right hemisphere 71.9
1817 Female, age 42, unknown 69.4
2667 Female, age 75, unknown 69.2
2224 Female, age 72, unknown 68.3
2825 Male, age 18, unknown 68.3
1815 Male, age 53, unknown 67.6
1816 Male, age 51, unknown 67.5
1944 Female, age 72, unknown 67.4
2007 Male, age 72, unknown 66.9
2273 Male, age 74, both hemispheres 66.9
2407 Male, age 75, both hemispheres 65.3
Red nucleus
nTPM: 71.4
1821 Female, age 72, unknown 74.3
2227 Male, age 72, unknown 74.0
1954 Female, age 42, unknown 73.4
2503 Female, age 72, unknown 73.3
2769 Male, age 72, unknown 73.1
1904 Male, age 53, unknown 73.0
1865 Male, age 51, unknown 70.5
2588 Male, age 74, left hemisphere 70.5
2823 Male, age 76, right hemisphere 70.1
2785 Male, age 18, unknown 69.9
2725 Female, age 75, unknown 68.8
2584 Male, age 75, left hemisphere 65.9
Substantia nigra
nTPM: 70.8
2699 Male, age 18, unknown 75.8
1851 Male, age 51, unknown 73.5
2665 Male, age 74, both hemispheres 73.4
1916 Female, age 42, unknown 72.6
1889 Female, age 72, unknown 70.5
2409 Female, age 72, unknown 69.5
2590 Female, age 75, unknown 69.5
2583 Male, age 75, right hemisphere 68.7
1941 Male, age 53, unknown 67.2
2241 Male, age 72, unknown 67.1
Superior colliculus
nTPM: 69.1
1995 Male, age 72, unknown 71.8
2587 Male, age 74, left hemisphere 70.0
1913 Female, age 42, unknown 69.9
1796 Male, age 53, unknown 69.8
2668 Female, age 75, unknown 69.5
1839 Male, age 51, unknown 68.7
2087 Female, age 72, unknown 68.7
1895 Male, age 76, right hemisphere 68.4
2664 Male, age 75, both hemispheres 68.0
2261 Male, age 18, unknown 66.4
Ventral tegmental area
nTPM: 71.2
1915 Female, age 42, unknown 74.8
2021 Male, age 53, unknown 72.3
1942 Male, age 51, unknown 71.0
2218 Male, age 76, both hemispheres 71.0
2410 Female, age 72, unknown 69.5
2223 Female, age 72, unknown 68.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.8
Samples: 139

Max nTPM: 229.1
Min nTPM: 15.5
Std nTPM: 37.7
Median nTPM: 78.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 229.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 194.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 178.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 172.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 171.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 161.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 160.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 155.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 148.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 145.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 141.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.6
FF:10158-103A5 76 years, female 14.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.0
Pig sample Sample description nTPM
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 9.1
Sample C Male 7.6
Sample D Male 9.1
Periaqueductal gray
nTPM: 10.0
Samples: 3

Max nTPM: 10.7
Min nTPM: 9.2
Sample B Female 10.1
Sample C Male 9.2
Sample D Male 10.7
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 11.9
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 10.9
Sample C Male 8.9
Sample D Male 11.9
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 9.2
Sample C Male 7.9
Sample D Male 8.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 11.9
Min nTPM: 5.5
Sample A Male 11.9
Sample B Male 11.6
Sample C Female 5.5
Sample D Female 9.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70194898 Antisense, RP_050517_02_A03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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