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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:184.1 nTPM
HPA:184.1 nTPM
GTEx:124.6 nTPM
FANTOM5:245.2 Scaled Tags Per Million
Pig:88.1 nTPM
Mouse:93.5 nTPM
Allen mouse:6.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 184.1
Sample id Sample description nTPM
Amygdala
nTPM: 184.1
2814 Male, age 76, right hemisphere 197.8
2695 Female, age 67, right hemisphere 185.6
2514 Male, age 75, right hemisphere 184.0
2517 Female, age 94, left hemisphere 177.4
1987 Female, age 91, left hemisphere 175.8
Basal amygdala
nTPM: 174.3
2685 Female, age 94, left hemisphere 184.2
2110 Male, age 80, left hemisphere 179.2
1955 Male, age 76, both hemispheres 175.3
2609 Male, age 75, right hemisphere 174.7
2243 Female, age 91, right hemisphere 168.1
2827 Female, age 67, right hemisphere 164.2
Central amygdala
nTPM: 173.1
1905 Male, age 76, both hemispheres 189.0
2701 Female, age 91, right hemisphere 188.5
2239 Male, age 80, left hemisphere 174.2
2515 Male, age 75, right hemisphere 166.5
2826 Female, age 94, left hemisphere 147.3
Corticomedial amygdala
nTPM: 170.9
2429 Female, age 94, left hemisphere 181.9
2428 Male, age 75, right hemisphere 175.9
2829 Male, age 80, left hemisphere 171.9
2240 Male, age 76, both hemispheres 171.4
2242 Female, age 91, right hemisphere 166.1
2535 Female, age 67, right hemisphere 158.4
Lateral amygdala
nTPM: 176.1
2516 Male, age 75, right hemisphere 187.6
1883 Male, age 76, both hemispheres 181.8
2256 Male, age 80, left hemisphere 180.2
2255 Female, age 91, right hemisphere 179.9
2830 Female, age 67, right hemisphere 165.0
2534 Female, age 94, left hemisphere 162.0
Stria terminalis, bed nucleus
nTPM: 179.6
2201 Male, age 74, unknown 185.3
2486 Female, age 94, both hemispheres 181.8
1974 Female, age 91, both hemispheres 171.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 124.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 124.6
Samples: 152

Max nTPM: 241.9
Min nTPM: 36.1
Std nTPM: 36.9
Median nTPM: 119.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 241.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 226.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 225.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 225.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 208.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 205.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 200.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 190.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 185.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 181.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 179.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 178.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 176.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 176.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 175.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 172.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 172.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 172.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 168.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 167.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 166.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 163.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 163.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 162.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 162.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 162.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 160.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 157.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 157.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 156.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 156.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 155.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 152.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 151.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 150.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 149.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 148.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 146.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 146.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 145.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 144.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 139.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 139.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 138.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 138.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 138.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 137.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 136.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 134.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 134.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 133.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 132.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 132.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 132.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 132.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 131.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 131.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 130.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 128.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 128.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 128.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 127.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 127.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 127.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 126.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 125.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 125.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 124.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 124.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 124.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 121.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 120.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 120.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 120.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 120.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 117.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 117.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 117.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 116.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 115.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 115.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 115.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 114.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 113.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 113.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 112.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 112.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 112.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 112.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 111.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 109.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 109.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 109.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 109.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 109.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 108.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 108.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 107.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 106.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 106.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 106.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 106.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 105.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 105.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 105.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 104.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 104.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 103.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 101.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 101.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 101.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 100.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 100.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 100.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 99.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 99.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 99.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 98.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 98.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 98.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 95.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 92.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 91.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 90.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 88.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 88.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 87.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 87.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 86.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 86.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 86.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 85.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 83.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 81.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 79.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 78.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 75.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 72.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 72.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 70.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 70.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 68.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 67.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 66.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 64.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 62.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 61.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 61.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 36.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 245.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 245.2
FF:10151-102I7 76 years, female 245.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 88.1
Pig sample Sample description nTPM
Amygdala
nTPM: 88.1
Samples: 4

Max nTPM: 96.1
Min nTPM: 78.9
Sample A Female 86.5
Sample B Female 96.1
Sample C Male 90.9
Sample D Male 78.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 93.5
Samples: 4

Max nTPM: 100.0
Min nTPM: 84.8
Sample A Male 84.8
Sample B Male 100.0
Sample C Female 94.6
Sample D Female 94.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.5
67978473 Antisense, RP_040923_01_B10, Mouse strain C57BL/6J (56 days, male) 13.1
71991953 Antisense, RP_051012_03_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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