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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:248.7 nTPM
GTEx:248.7 nTPM
FANTOM5:224.4 Scaled Tags Per Million
Pig:71.0 nTPM
Mouse:128.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 248.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 248.7
Samples: 105

Max nTPM: 683.3
Min nTPM: 96.4
Std nTPM: 118.4
Median nTPM:
491_1 89 years, female 683.3
308_1 70 years, female 639.5
311_1 78 years, male 601.7
139_1 64 years, female 539.5
322_1 76 years, male 522.6
317_1 60 years, male 502.6
495_1 57 years, female 470.1
109_1 81 years, female 434.5
315_1 62 years, female 431.9
117_1 61 years, male 431.3
41_1 94 years, female 424.8
119_1 70 years, female 412.1
6_1 73 years, female 410.6
162_1 79 years, female 361.6
137_1 83 years, male 360.9
350_1 84 years, female 357.2
43_1 64 years, female 352.3
447_1 81 years, male 344.6
142_1 61 years, female 338.9
490_1 67 years, female 336.2
218_1 71 years, female 332.3
288_1 66 years, female 321.1
4_1 88 years, female 315.5
17_1 71 years, male 310.3
394_1 75 years, female 309.1
145_1 84 years, male 304.0
379_1 60 years, male 302.7
313_1 79 years, female 301.7
348_1 84 years, male 301.7
354_1 81 years, female 301.2
396_1 62 years, male 298.0
335_1 73 years, female 292.0
173_1 67 years, male 278.6
307_1 66 years, female 274.0
415_1 77 years, female 272.6
389_1 86 years, female 267.2
120_1 70 years, female 263.0
349_1 83 years, male 257.2
35_1 74 years, female 255.8
452_1 88 years, female 255.3
501_1 88 years, male 249.4
89_1 63 years, male 239.1
324_1 76 years, male 238.8
99_1 64 years, male 224.6
266_1 85 years, male 221.8
189_1 76 years, male 217.0
351_1 91 years, male 213.6
18_1 88 years, male 212.5
293_1 68 years, female 210.5
353_1 82 years, female 209.6
2_1 77 years, female 209.5
32_1 67 years, male 208.9
386_1 76 years, male 207.3
413_1 59 years, female 203.2
149_1 88 years, male 201.4
347_1 72 years, male 200.6
314_1 67 years, male 200.2
291_1 76 years, male 199.6
466_1 57 years, female 195.4
414_1 84 years, female 193.4
265_1 87 years, male 191.7
115_1 83 years, male 191.1
320_1 89 years, female 189.5
316_1 62 years, male 187.7
254_1 77 years, female 187.5
9_1 66 years, female 184.5
126_1 63 years, male 184.4
499_1 55 years, female 183.5
286_1 68 years, female 183.3
384_1 83 years, male 182.3
404_1 82 years, female 180.4
406_1 79 years, male 178.0
217_1 76 years, male 177.4
264_1 73 years, female 174.1
42_1 85 years, male 174.0
243_1 75 years, male 172.1
375_1 74 years, female 171.6
321_1 62 years, female 170.8
229_1 69 years, female 169.0
319_1 81 years, male 166.4
376_1 75 years, female 164.6
518_1 75 years, female 161.6
81_1 67 years, male 160.2
526_1 61 years, male 159.1
237_1 82 years, male 155.2
318_1 68 years, male 153.3
506_1 65 years, male 152.0
295_1 61 years, female 150.7
468_1 89 years, male 150.3
177_1 74 years, male 146.9
517_1 88 years, male 144.4
246_1 77 years, male 143.8
251_1 78 years, male 139.7
480_1 63 years, male 139.4
153_1 70 years, female 139.0
405_1 91 years, male 135.6
352_1 62 years, male 134.6
356_1 87 years, female 133.7
503_1 68 years, male 130.3
172_1 72 years, female 125.6
292_1 71 years, male 123.7
425_1 59 years, female 121.0
355_1 70 years, female 119.9
377_1 82 years, female 109.7
163_1 78 years, male 96.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 224.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 224.4
FF:10030-101E3 24-65 years, mixed 224.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 71.0
Pig sample Sample description nTPM
Retina
nTPM: 71.0
Samples: 4

Max nTPM: 78.3
Min nTPM: 63.9
Sample A Female 67.0
Sample B Female 63.9
Sample C Male 78.3
Sample D Male 74.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 128.0
Mouse sample Sample description nTPM
Retina
nTPM: 128.0
Samples: 4

Max nTPM: 155.3
Min nTPM: 110.0
Sample A Male 110.0
Sample B Male 155.3
Sample C Female 114.5
Sample D Female 132.1

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