MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.0 nTPM
HPA:86.0 nTPM
GTEx:71.6 nTPM
FANTOM5:215.1 Scaled Tags Per Million
Pig:102.6 nTPM
Mouse:112.0 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.1
2586 Male, age 75, left hemisphere 93.7
2019 Male, age 18, unknown 87.1
1827 Male, age 72, unknown 85.3
1833 Male, age 53, unknown 83.1
2828 Female, age 72, unknown 83.0
1870 Female, age 42, unknown 82.2
1830 Male, age 51, unknown 80.4
2219 Male, age 76, both hemispheres 79.9
2411 Female, age 72, unknown 79.8
2666 Male, age 74, left hemisphere 76.3
Dorsal raphe nucleus
nTPM: 78.3
1828 Male, age 53, unknown 81.7
2016 Female, age 72, unknown 78.4
2298 Female, age 72, unknown 78.0
2047 Male, age 72, unknown 77.8
2750 Male, age 76, both hemispheres 75.6
Inferior colliculus
nTPM: 81.5
2849 Male, age 72, unknown 84.8
1848 Female, age 42, unknown 82.8
1890 Male, age 53, unknown 82.1
2097 Female, age 72, unknown 76.3
Median raphe nucleus
nTPM: 81.5
2220 Male, age 76, midline 81.5
Pedunculopontine tegmental nucleus
nTPM: 82.9
2334 Male, age 80, both hemispheres 86.3
2338 Male, age 61, both hemispheres 82.4
1921 Female, age 85, both hemispheres 79.9
Periaquaductal grey, anterior
nTPM: 81.0
2502 Female, age 75, unknown 82.7
1795 Male, age 51, unknown 80.2
1947 Male, age 18, unknown 80.2
Periaquaductal grey, dorsal
nTPM: 79.0
1831 Male, age 72, unknown 81.9
2850 Male, age 76, both hemispheres 79.3
1840 Male, age 53, unknown 77.8
2464 Female, age 72, unknown 77.1
Periaquaductal grey, lateral
nTPM: 81.5
2140 Male, age 76, both hemispheres 84.0
2053 Male, age 18, unknown 83.4
2272 Male, age 74, both hemispheres 77.0
Pretectal area
nTPM: 83.5
2407 Male, age 75, both hemispheres 94.0
1816 Male, age 51, unknown 88.8
1817 Female, age 42, unknown 86.3
2667 Female, age 75, unknown 85.3
2825 Male, age 18, unknown 84.5
2007 Male, age 72, unknown 83.2
1944 Female, age 72, unknown 83.0
1815 Male, age 53, unknown 82.1
2316 Male, age 76, right hemisphere 80.5
2273 Male, age 74, both hemispheres 76.0
2224 Female, age 72, unknown 75.3
Red nucleus
nTPM: 86.0
2588 Male, age 74, left hemisphere 93.6
2823 Male, age 76, right hemisphere 90.5
2725 Female, age 75, unknown 89.8
2503 Female, age 72, unknown 88.8
1821 Female, age 72, unknown 87.9
1865 Male, age 51, unknown 87.1
2584 Male, age 75, left hemisphere 83.8
2769 Male, age 72, unknown 82.8
2785 Male, age 18, unknown 82.2
1954 Female, age 42, unknown 82.1
2227 Male, age 72, unknown 82.0
1904 Male, age 53, unknown 81.2
Substantia nigra
nTPM: 82.0
2409 Female, age 72, unknown 100.9
2665 Male, age 74, both hemispheres 84.5
1889 Female, age 72, unknown 80.8
2583 Male, age 75, right hemisphere 80.5
2699 Male, age 18, unknown 80.5
1941 Male, age 53, unknown 79.9
1851 Male, age 51, unknown 79.6
2590 Female, age 75, unknown 78.8
1916 Female, age 42, unknown 78.0
2241 Male, age 72, unknown 76.6
Superior colliculus
nTPM: 83.3
1839 Male, age 51, unknown 88.1
1895 Male, age 76, right hemisphere 86.3
1995 Male, age 72, unknown 86.2
2664 Male, age 75, both hemispheres 83.7
2587 Male, age 74, left hemisphere 83.6
1796 Male, age 53, unknown 83.2
2087 Female, age 72, unknown 82.5
2261 Male, age 18, unknown 80.7
1913 Female, age 42, unknown 79.7
2668 Female, age 75, unknown 79.0
Ventral tegmental area
nTPM: 79.8
2410 Female, age 72, unknown 83.2
2021 Male, age 53, unknown 82.4
2223 Female, age 72, unknown 82.3
1915 Female, age 42, unknown 79.8
2218 Male, age 76, both hemispheres 76.0
1942 Male, age 51, unknown 75.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.6
Samples: 139

Max nTPM: 131.0
Min nTPM: 43.3
Std nTPM: 14.3
Median nTPM: 68.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 131.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 108.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 107.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 102.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 101.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 100.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 98.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 97.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 97.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 96.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 95.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 215.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 215.1
FF:10158-103A5 76 years, female 215.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 102.6
Pig sample Sample description nTPM
Midbrain
nTPM: 102.1
Samples: 4

Max nTPM: 114.3
Min nTPM: 95.0
Sample A Female 114.3
Sample B Female 99.3
Sample C Male 99.7
Sample D Male 95.0
Periaqueductal gray
nTPM: 102.6
Samples: 3

Max nTPM: 106.7
Min nTPM: 99.7
Sample B Female 101.3
Sample C Male 106.7
Sample D Male 99.7
Substantia nigra
nTPM: 97.4
Samples: 4

Max nTPM: 105.4
Min nTPM: 84.8
Sample A Female 84.8
Sample B Female 104.1
Sample C Male 95.4
Sample D Male 105.4
Superior colliculi
nTPM: 100.1
Samples: 4

Max nTPM: 113.8
Min nTPM: 89.3
Sample A Female 89.3
Sample B Female 113.8
Sample C Male 97.5
Sample D Male 99.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.0
Samples: 4

Max nTPM: 117.1
Min nTPM: 103.1
Sample A Male 103.1
Sample B Male 114.6
Sample C Female 117.1
Sample D Female 113.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
69014464 Antisense, RP_050310_01_B08, Mouse strain C57BL/6J (56 days, male) 9.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.