MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:222.8 nTPM
HPA:222.8 nTPM
GTEx:196.7 nTPM
FANTOM5:234.5 Scaled Tags Per Million
Pig:526.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 222.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 211.6
2586 Male, age 75, left hemisphere 259.1
2666 Male, age 74, left hemisphere 220.3
2828 Female, age 72, unknown 213.1
2219 Male, age 76, both hemispheres 212.9
2019 Male, age 18, unknown 209.9
1827 Male, age 72, unknown 207.4
2411 Female, age 72, unknown 206.3
1833 Male, age 53, unknown 198.3
1870 Female, age 42, unknown 195.8
1830 Male, age 51, unknown 192.8
Dorsal raphe nucleus
nTPM: 204.7
1828 Male, age 53, unknown 216.1
2047 Male, age 72, unknown 212.4
2298 Female, age 72, unknown 200.8
2016 Female, age 72, unknown 199.0
2750 Male, age 76, both hemispheres 195.3
Inferior colliculus
nTPM: 208.0
1890 Male, age 53, unknown 211.0
2849 Male, age 72, unknown 209.3
1848 Female, age 42, unknown 209.1
2097 Female, age 72, unknown 202.5
Median raphe nucleus
nTPM: 201.1
2220 Male, age 76, midline 201.1
Pedunculopontine tegmental nucleus
nTPM: 203.1
1921 Female, age 85, both hemispheres 204.9
2334 Male, age 80, both hemispheres 204.0
2338 Male, age 61, both hemispheres 200.5
Periaquaductal grey, anterior
nTPM: 208.5
1795 Male, age 51, unknown 213.0
1947 Male, age 18, unknown 206.4
2502 Female, age 75, unknown 206.2
Periaquaductal grey, dorsal
nTPM: 198.3
1840 Male, age 53, unknown 205.2
1831 Male, age 72, unknown 202.8
2464 Female, age 72, unknown 197.7
2850 Male, age 76, both hemispheres 187.3
Periaquaductal grey, lateral
nTPM: 189.1
2272 Male, age 74, both hemispheres 192.1
2053 Male, age 18, unknown 191.8
2140 Male, age 76, both hemispheres 183.3
Pretectal area
nTPM: 207.0
2007 Male, age 72, unknown 232.1
1816 Male, age 51, unknown 226.3
1817 Female, age 42, unknown 224.5
1944 Female, age 72, unknown 209.1
1815 Male, age 53, unknown 209.0
2407 Male, age 75, both hemispheres 205.6
2667 Female, age 75, unknown 200.7
2825 Male, age 18, unknown 200.0
2316 Male, age 76, right hemisphere 198.9
2224 Female, age 72, unknown 186.2
2273 Male, age 74, both hemispheres 184.8
Red nucleus
nTPM: 210.8
2584 Male, age 75, left hemisphere 233.0
2503 Female, age 72, unknown 225.5
2588 Male, age 74, left hemisphere 218.3
1821 Female, age 72, unknown 216.4
2769 Male, age 72, unknown 213.6
2227 Male, age 72, unknown 210.7
2785 Male, age 18, unknown 210.1
1904 Male, age 53, unknown 206.0
2725 Female, age 75, unknown 205.5
1954 Female, age 42, unknown 200.3
1865 Male, age 51, unknown 197.8
2823 Male, age 76, right hemisphere 192.3
Substantia nigra
nTPM: 222.8
2665 Male, age 74, both hemispheres 254.0
1916 Female, age 42, unknown 252.4
1851 Male, age 51, unknown 230.3
2699 Male, age 18, unknown 226.9
2583 Male, age 75, right hemisphere 225.5
2590 Female, age 75, unknown 218.1
1889 Female, age 72, unknown 216.5
1941 Male, age 53, unknown 214.8
2409 Female, age 72, unknown 195.0
2241 Male, age 72, unknown 194.5
Superior colliculus
nTPM: 208.4
2664 Male, age 75, both hemispheres 232.3
2668 Female, age 75, unknown 224.3
1796 Male, age 53, unknown 221.9
2261 Male, age 18, unknown 208.5
1839 Male, age 51, unknown 205.4
2587 Male, age 74, left hemisphere 204.9
2087 Female, age 72, unknown 202.8
1895 Male, age 76, right hemisphere 197.7
1995 Male, age 72, unknown 196.3
1913 Female, age 42, unknown 189.5
Ventral tegmental area
nTPM: 209.7
1915 Female, age 42, unknown 224.3
1942 Male, age 51, unknown 212.3
2410 Female, age 72, unknown 211.4
2218 Male, age 76, both hemispheres 211.1
2223 Female, age 72, unknown 204.7
2021 Male, age 53, unknown 194.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 196.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 196.7
Samples: 139

Max nTPM: 416.9
Min nTPM: 85.1
Std nTPM: 48.3
Median nTPM: 192.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 416.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 310.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 297.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 291.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 290.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 288.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 288.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 274.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 267.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 267.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 266.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 234.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 234.5
FF:10158-103A5 76 years, female 234.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 526.5
Pig sample Sample description nTPM
Midbrain
nTPM: 449.5
Samples: 4

Max nTPM: 497.8
Min nTPM: 409.9
Sample A Female 497.8
Sample B Female 409.9
Sample C Male 465.8
Sample D Male 424.6
Periaqueductal gray
nTPM: 333.5
Samples: 3

Max nTPM: 361.7
Min nTPM: 282.6
Sample B Female 361.7
Sample C Male 356.1
Sample D Male 282.6
Substantia nigra
nTPM: 383.6
Samples: 4

Max nTPM: 482.8
Min nTPM: 338.0
Sample A Female 482.8
Sample B Female 347.3
Sample C Male 366.2
Sample D Male 338.0
Superior colliculi
nTPM: 526.5
Samples: 4

Max nTPM: 550.3
Min nTPM: 490.0
Sample A Female 544.7
Sample B Female 550.3
Sample C Male 520.8
Sample D Male 490.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.