We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SLC25A6
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SLC25A6
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:208.3 nTPM
HPA:208.3 nTPM
GTEx:133.8 nTPM
FANTOM5:221.5 Scaled Tags Per Million
Pig:391.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 208.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 195.0
2565 Male, age 75, midline 213.8
2194 Female, age 79, both hemispheres 211.3
1981 Female, age 72, midline 191.5
2816 Male, age 47, midline 186.1
2048 Male, age 55, midline 172.5
Cervical spinal cord, dorsal horn
nTPM: 184.3
2173 Female, age 72, unknown 192.4
1877 Male, age 55, unknown 188.2
2069 Male, age 47, both hemispheres 185.6
2721 Male, age 90, both hemispheres 182.2
2296 Male, age 66, both hemispheres 179.8
2297 Male, age 75, both hemispheres 177.7
Cervical spinal cord, ventral horn
nTPM: 208.3
2480 Male, age 75, both hemispheres 231.7
2809 Male, age 90, both hemispheres 223.1
2068 Male, age 55, unknown 215.0
2820 Female, age 79, both hemispheres 204.4
2295 Male, age 66, both hemispheres 191.6
2098 Female, age 72, unknown 183.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 133.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 133.8
Samples: 159

Max nTPM: 240.7
Min nTPM: 71.6
Std nTPM: 26.8
Median nTPM: 130.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 240.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 236.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 220.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 188.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 187.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 184.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 184.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 182.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 180.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 179.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 173.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 172.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 172.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 171.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 171.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 170.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 168.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 165.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 165.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 164.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 163.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 160.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 159.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 159.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 157.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 156.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 155.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 155.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 154.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 154.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 154.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 153.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 152.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 151.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 151.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 149.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 149.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 148.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 148.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 148.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 147.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 145.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 145.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 144.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 144.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 144.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 143.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 142.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 142.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 142.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 142.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 141.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 141.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 140.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 140.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 140.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 140.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 139.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 139.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 138.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 138.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 138.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 137.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 137.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 136.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 136.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 136.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 133.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 133.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 133.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 133.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 133.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 132.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 132.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 132.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 132.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 131.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 131.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 131.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 130.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 130.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 129.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 129.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 129.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 128.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 128.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 128.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 128.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 127.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 127.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 127.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 127.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 126.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 126.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 125.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 125.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 125.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 124.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 124.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 123.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 123.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 123.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 122.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 122.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 121.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 121.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 121.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 120.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 120.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 120.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 120.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 117.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 117.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 116.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 116.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 116.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 114.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 114.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 114.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 113.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 112.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 112.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 112.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 112.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 111.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 110.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 110.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 109.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 109.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 109.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 109.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 107.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 107.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 107.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 106.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 106.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 106.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 106.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 106.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 106.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 105.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 104.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 104.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 104.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 103.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 103.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 102.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 100.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 98.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 98.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 96.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 95.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 93.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 93.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 81.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 75.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 71.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 221.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 221.5
FF:10181-103D1 60 years, female 240.1
FF:10159-103A6 76 years, female 202.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 391.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 365.9
Samples: 4

Max nTPM: 441.5
Min nTPM: 332.6
Sample A Female 332.6
Sample B Female 333.9
Sample C Male 441.5
Sample D Male 355.7
Ventral spinal cord
nTPM: 391.7
Samples: 4

Max nTPM: 447.1
Min nTPM: 350.3
Sample A Female 350.3
Sample B Female 413.4
Sample C Male 447.1
Sample D Male 355.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.