BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.0 nTPM
HPA:44.0 nTPM
GTEx:51.1 nTPM
FANTOM5:139.4 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:95.4 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.6
2846 Female, age 79, unknown 40.2
2288 Male, age 75, left hemisphere 38.9
2481 Female, age 94, left hemisphere 37.1
1781 Male, age 74, unknown 36.5
1857 Female, age 85, left hemisphere 35.7
1854 Male, age 80, left hemisphere 34.5
2290 Female, age 72, unknown 34.3
2289 Male, age 61, right hemisphere 28.0
Claustrum
nTPM: 35.2
2392 Female, age 94, both hemispheres 43.7
1956 Male, age 74, unknown 38.1
2491 Male, age 75, both hemispheres 36.3
2198 Male, age 80, both hemispheres 36.2
2196 Female, age 79, unknown 35.2
2284 Female, age 91, both hemispheres 34.1
2568 Male, age 61, both hemispheres 33.9
2645 Female, age 72, unknown 31.2
2292 Female, age 85, both hemispheres 28.7
Globus pallidus, externus
nTPM: 32.4
2772 Female, age 79, unknown 40.9
2395 Male, age 75, both hemispheres 40.4
1996 Male, age 80, right hemisphere 30.8
2567 Female, age 72, unknown 26.0
2646 Male, age 61, right hemisphere 24.1
Globus pallidus, internus
nTPM: 33.4
2287 Male, age 75, right hemisphere 43.2
1818 Male, age 74, unknown 35.3
2778 Female, age 91, both hemispheres 35.3
2483 Female, age 94, right hemisphere 34.7
2037 Male, age 80, right hemisphere 30.9
2566 Female, age 72, unknown 29.0
2111 Female, age 85, right hemisphere 25.5
Nucleus accumbens
nTPM: 36.3
1856 Female, age 91, right hemisphere 44.1
2286 Male, age 75, left hemisphere 39.1
2391 Female, age 94, left hemisphere 38.8
2698 Female, age 72, unknown 36.4
1783 Male, age 74, unknown 34.8
1806 Female, age 85, left hemisphere 34.6
2824 Male, age 61, right hemisphere 34.4
2732 Male, age 80, right hemisphere 28.0
Nucleus basalis of Meynert
nTPM: 32.6
2821 Male, age 75, both hemispheres 36.0
2393 Male, age 80, right hemisphere 34.9
2484 Female, age 94, left hemisphere 34.4
2569 Male, age 61, both hemispheres 25.1
Nucleus of the diagonal band
nTPM: 44.0
1812 Female, age 91, both hemispheres 51.3
2775 Male, age 80, right hemisphere 48.4
2029 Male, age 61, right hemisphere 44.7
2195 Female, age 85, both hemispheres 41.6
1979 Male, age 74, unknown 34.0
Olfactory tubercle
nTPM: 42.5
1846 Male, age 80, right hemisphere 46.2
1998 Female, age 91, both hemispheres 45.4
2487 Female, age 94, left hemisphere 42.2
2856 Male, age 75, right hemisphere 36.3
Putamen
nTPM: 35.3
1937 Female, age 91, right hemisphere 39.9
1838 Male, age 80, right hemisphere 38.7
2466 Female, age 79, unknown 37.8
2482 Female, age 94, left hemisphere 36.9
1829 Male, age 74, unknown 34.2
2647 Male, age 75, left hemisphere 32.9
2489 Female, age 72, unknown 26.4
Septal nuclei
nTPM: 39.0
2031 Female, age 72, unknown 52.1
2009 Female, age 91, both hemispheres 43.4
1960 Male, age 74, unknown 42.4
2629 Female, age 94, right hemisphere 41.0
2394 Male, age 61, left hemisphere 33.7
2199 Male, age 80, right hemisphere 31.4
2059 Female, age 85, both hemispheres 29.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 47.9
Samples: 246

Max nTPM: 131.6
Min nTPM: 26.5
Std nTPM: 14.4
Median nTPM: 44.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 131.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 114.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 103.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 90.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 85.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 80.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 78.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 78.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 77.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 77.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 75.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.1
Samples: 246

Max nTPM: 95.6
Min nTPM: 30.3
Std nTPM: 11.5
Median nTPM: 50.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 95.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 87.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 85.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 80.8
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 80.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 79.9
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 78.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 78.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 74.9
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 74.7
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 73.8
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Brain - Putamen (basal ganglia)
Average nTPM: 49.7
Samples: 205

Max nTPM: 91.6
Min nTPM: 28.9
Std nTPM: 11.8
Median nTPM: 47.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 91.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 88.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 82.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 81.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 81.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 80.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 78.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 77.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 76.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 73.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 71.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.3
FF:10164-103B2 76 years, female 98.3
Globus pallidus
Scaled Tags Per Million: 105.1
FF:10175-103C4 60 years, female 131.0
FF:10161-103A8 76 years, female 79.3
Nucleus accumbens
Scaled Tags Per Million: 136.8
FF:10037-101F1 23-56 years, mixed 136.8
Putamen
Scaled Tags Per Million: 139.4
FF:10176-103C5 60 years, female 139.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Caudate
nTPM: 16.8
Samples: 4

Max nTPM: 18.4
Min nTPM: 15.2
Sample A Female 16.9
Sample B Female 15.2
Sample C Male 18.4
Sample D Male 16.5
Putamen
nTPM: 21.7
Samples: 4

Max nTPM: 28.5
Min nTPM: 17.7
Sample A Female 19.7
Sample B Female 17.7
Sample C Male 28.5
Sample D Male 20.7
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 16.3
Sample A Female 17.9
Sample B Female 16.3
Sample C Male 21.5
Sample D Male 18.9
Ventral pallidum
nTPM: 17.9
Samples: 4

Max nTPM: 21.0
Min nTPM: 16.0
Sample A Female 16.9
Sample B Female 17.6
Sample C Male 21.0
Sample D Male 16.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 95.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 75.2
Samples: 4

Max nTPM: 79.3
Min nTPM: 70.1
Sample A Male 73.1
Sample B Male 70.1
Sample C Female 78.2
Sample D Female 79.3
Septum
nTPM: 95.4
Samples: 4

Max nTPM: 104.1
Min nTPM: 85.9
Sample A Male 85.9
Sample B Male 104.1
Sample C Female 90.0
Sample D Female 101.7
Ventral forebrain
nTPM: 84.7
Samples: 4

Max nTPM: 88.6
Min nTPM: 82.8
Sample A Male 88.6
Sample B Male 83.1
Sample C Female 84.3
Sample D Female 82.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68844140 Antisense, RP_050222_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
68844140 Antisense, RP_050222_01_A01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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