MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.2 nTPM
HPA:42.2 nTPM
GTEx:63.6 nTPM
FANTOM5:74.1 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:130.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.1
2411 Female, age 72, unknown 40.4
2019 Male, age 18, unknown 38.9
1827 Male, age 72, unknown 38.0
2586 Male, age 75, left hemisphere 37.9
2666 Male, age 74, left hemisphere 36.8
1870 Female, age 42, unknown 36.2
2219 Male, age 76, both hemispheres 35.6
1833 Male, age 53, unknown 34.0
1830 Male, age 51, unknown 32.4
2828 Female, age 72, unknown 31.1
Dorsal raphe nucleus
nTPM: 35.5
2298 Female, age 72, unknown 37.1
1828 Male, age 53, unknown 36.4
2047 Male, age 72, unknown 36.4
2750 Male, age 76, both hemispheres 35.6
2016 Female, age 72, unknown 31.8
Inferior colliculus
nTPM: 36.3
2097 Female, age 72, unknown 39.1
1848 Female, age 42, unknown 36.0
2849 Male, age 72, unknown 35.3
1890 Male, age 53, unknown 34.6
Median raphe nucleus
nTPM: 39.0
2220 Male, age 76, midline 39.0
Pedunculopontine tegmental nucleus
nTPM: 37.6
1921 Female, age 85, both hemispheres 40.4
2334 Male, age 80, both hemispheres 39.6
2338 Male, age 61, both hemispheres 32.9
Periaquaductal grey, anterior
nTPM: 38.5
2502 Female, age 75, unknown 40.9
1947 Male, age 18, unknown 39.1
1795 Male, age 51, unknown 35.7
Periaquaductal grey, dorsal
nTPM: 34.5
1840 Male, age 53, unknown 37.1
2850 Male, age 76, both hemispheres 34.0
2464 Female, age 72, unknown 33.8
1831 Male, age 72, unknown 33.2
Periaquaductal grey, lateral
nTPM: 32.3
2053 Male, age 18, unknown 35.1
2272 Male, age 74, both hemispheres 32.5
2140 Male, age 76, both hemispheres 29.4
Pretectal area
nTPM: 41.8
1816 Male, age 51, unknown 55.4
1944 Female, age 72, unknown 55.3
1817 Female, age 42, unknown 49.3
2007 Male, age 72, unknown 48.1
1815 Male, age 53, unknown 46.9
2224 Female, age 72, unknown 37.4
2273 Male, age 74, both hemispheres 36.4
2667 Female, age 75, unknown 35.4
2825 Male, age 18, unknown 34.0
2407 Male, age 75, both hemispheres 33.3
2316 Male, age 76, right hemisphere 29.1
Red nucleus
nTPM: 33.8
2725 Female, age 75, unknown 39.4
1821 Female, age 72, unknown 38.3
2584 Male, age 75, left hemisphere 36.2
2785 Male, age 18, unknown 35.6
2588 Male, age 74, left hemisphere 35.4
1865 Male, age 51, unknown 32.3
1954 Female, age 42, unknown 32.3
2503 Female, age 72, unknown 32.1
2227 Male, age 72, unknown 31.4
1904 Male, age 53, unknown 31.1
2823 Male, age 76, right hemisphere 30.9
2769 Male, age 72, unknown 30.7
Substantia nigra
nTPM: 42.2
1889 Female, age 72, unknown 51.9
2241 Male, age 72, unknown 48.1
1941 Male, age 53, unknown 46.9
1916 Female, age 42, unknown 46.0
1851 Male, age 51, unknown 42.9
2409 Female, age 72, unknown 39.8
2665 Male, age 74, both hemispheres 38.8
2699 Male, age 18, unknown 36.2
2590 Female, age 75, unknown 35.9
2583 Male, age 75, right hemisphere 35.2
Superior colliculus
nTPM: 37.2
2087 Female, age 72, unknown 45.4
2261 Male, age 18, unknown 39.6
2668 Female, age 75, unknown 39.2
1895 Male, age 76, right hemisphere 38.0
1913 Female, age 42, unknown 37.0
1796 Male, age 53, unknown 35.9
2587 Male, age 74, left hemisphere 35.8
1839 Male, age 51, unknown 35.6
2664 Male, age 75, both hemispheres 32.7
1995 Male, age 72, unknown 32.4
Ventral tegmental area
nTPM: 38.1
2410 Female, age 72, unknown 48.0
2218 Male, age 76, both hemispheres 40.2
1915 Female, age 42, unknown 37.7
1942 Male, age 51, unknown 36.0
2223 Female, age 72, unknown 33.8
2021 Male, age 53, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.6
Samples: 139

Max nTPM: 147.7
Min nTPM: 33.2
Std nTPM: 21.9
Median nTPM: 57.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 147.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 138.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 136.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 133.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 125.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 116.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 106.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 105.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 101.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 99.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 95.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.1
FF:10158-103A5 76 years, female 74.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 26.3
Min nTPM: 21.4
Sample A Female 21.4
Sample B Female 23.6
Sample C Male 26.3
Sample D Male 25.7
Periaqueductal gray
nTPM: 20.9
Samples: 3

Max nTPM: 23.0
Min nTPM: 19.3
Sample B Female 19.3
Sample C Male 23.0
Sample D Male 20.5
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 28.5
Min nTPM: 21.1
Sample A Female 28.5
Sample B Female 21.9
Sample C Male 26.9
Sample D Male 21.1
Superior colliculi
nTPM: 24.5
Samples: 4

Max nTPM: 30.6
Min nTPM: 15.3
Sample A Female 26.3
Sample B Female 15.3
Sample C Male 30.6
Sample D Male 25.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 130.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.0
Samples: 4

Max nTPM: 134.2
Min nTPM: 125.4
Sample A Male 125.4
Sample B Male 133.5
Sample C Female 126.8
Sample D Female 134.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68844140 Antisense, RP_050222_01_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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