MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:147.3 nTPM
HPA:147.3 nTPM
GTEx:45.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 147.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.4
2666 Male, age 74, left hemisphere 134.1
2219 Male, age 76, both hemispheres 127.3
1833 Male, age 53, unknown 116.8
1830 Male, age 51, unknown 114.5
2828 Female, age 72, unknown 113.7
2586 Male, age 75, left hemisphere 100.8
1870 Female, age 42, unknown 95.6
2019 Male, age 18, unknown 93.3
1827 Male, age 72, unknown 93.1
2411 Female, age 72, unknown 85.3
Dorsal raphe nucleus
nTPM: 93.2
2750 Male, age 76, both hemispheres 107.7
2047 Male, age 72, unknown 105.6
1828 Male, age 53, unknown 95.0
2016 Female, age 72, unknown 83.7
2298 Female, age 72, unknown 74.0
Inferior colliculus
nTPM: 99.5
2849 Male, age 72, unknown 124.8
1890 Male, age 53, unknown 99.4
1848 Female, age 42, unknown 97.4
2097 Female, age 72, unknown 76.4
Median raphe nucleus
nTPM: 147.3
2220 Male, age 76, midline 147.3
Pedunculopontine tegmental nucleus
nTPM: 109.5
2338 Male, age 61, both hemispheres 128.3
2334 Male, age 80, both hemispheres 111.2
1921 Female, age 85, both hemispheres 89.1
Periaquaductal grey, anterior
nTPM: 88.0
1795 Male, age 51, unknown 94.0
2502 Female, age 75, unknown 85.2
1947 Male, age 18, unknown 84.8
Periaquaductal grey, dorsal
nTPM: 99.2
2850 Male, age 76, both hemispheres 123.3
1831 Male, age 72, unknown 97.5
2464 Female, age 72, unknown 96.4
1840 Male, age 53, unknown 79.8
Periaquaductal grey, lateral
nTPM: 100.8
2140 Male, age 76, both hemispheres 118.3
2272 Male, age 74, both hemispheres 93.8
2053 Male, age 18, unknown 90.1
Pretectal area
nTPM: 94.3
2316 Male, age 76, right hemisphere 109.9
2407 Male, age 75, both hemispheres 107.5
2825 Male, age 18, unknown 101.2
2224 Female, age 72, unknown 97.7
2667 Female, age 75, unknown 97.0
1815 Male, age 53, unknown 92.4
1816 Male, age 51, unknown 91.1
1944 Female, age 72, unknown 89.9
1817 Female, age 42, unknown 89.5
2007 Male, age 72, unknown 84.6
2273 Male, age 74, both hemispheres 77.0
Red nucleus
nTPM: 109.4
2588 Male, age 74, left hemisphere 139.1
2823 Male, age 76, right hemisphere 136.2
2584 Male, age 75, left hemisphere 112.7
2227 Male, age 72, unknown 110.3
2785 Male, age 18, unknown 110.2
2769 Male, age 72, unknown 109.9
1865 Male, age 51, unknown 106.5
2503 Female, age 72, unknown 104.7
1904 Male, age 53, unknown 104.4
2725 Female, age 75, unknown 99.1
1954 Female, age 42, unknown 97.9
1821 Female, age 72, unknown 81.3
Substantia nigra
nTPM: 95.8
2699 Male, age 18, unknown 125.6
2665 Male, age 74, both hemispheres 108.4
2583 Male, age 75, right hemisphere 103.2
1941 Male, age 53, unknown 102.3
2590 Female, age 75, unknown 89.3
2241 Male, age 72, unknown 89.2
2409 Female, age 72, unknown 86.0
1916 Female, age 42, unknown 85.7
1851 Male, age 51, unknown 85.1
1889 Female, age 72, unknown 83.7
Superior colliculus
nTPM: 97.3
2668 Female, age 75, unknown 111.9
2664 Male, age 75, both hemispheres 102.3
2087 Female, age 72, unknown 101.9
2587 Male, age 74, left hemisphere 99.1
1839 Male, age 51, unknown 96.6
1895 Male, age 76, right hemisphere 95.9
1913 Female, age 42, unknown 95.9
1796 Male, age 53, unknown 95.5
2261 Male, age 18, unknown 87.9
1995 Male, age 72, unknown 86.2
Ventral tegmental area
nTPM: 97.6
2223 Female, age 72, unknown 113.9
2218 Male, age 76, both hemispheres 111.8
2021 Male, age 53, unknown 100.2
1942 Male, age 51, unknown 96.8
1915 Female, age 42, unknown 87.3
2410 Female, age 72, unknown 75.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.1
Samples: 139

Max nTPM: 126.6
Min nTPM: 11.9
Std nTPM: 19.0
Median nTPM: 41.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 126.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 102.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 96.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 93.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 92.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 88.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 85.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 83.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 81.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 80.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 79.8
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The Human Protein Atlas project is funded
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