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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:90.1 nTPM
HPA:90.1 nTPM
GTEx:52.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 90.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 84.3
2194 Female, age 79, both hemispheres 93.5
2816 Male, age 47, midline 92.5
2048 Male, age 55, midline 83.2
2565 Male, age 75, midline 81.7
1981 Female, age 72, midline 70.5
Cervical spinal cord, dorsal horn
nTPM: 77.7
2721 Male, age 90, both hemispheres 99.0
2297 Male, age 75, both hemispheres 84.7
1877 Male, age 55, unknown 78.2
2296 Male, age 66, both hemispheres 71.1
2069 Male, age 47, both hemispheres 68.2
2173 Female, age 72, unknown 65.1
Cervical spinal cord, ventral horn
nTPM: 90.1
2820 Female, age 79, both hemispheres 118.7
2068 Male, age 55, unknown 105.0
2809 Male, age 90, both hemispheres 83.8
2480 Male, age 75, both hemispheres 83.7
2295 Male, age 66, both hemispheres 80.1
2098 Female, age 72, unknown 68.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 52.7
Samples: 159

Max nTPM: 169.0
Min nTPM: 9.7
Std nTPM: 22.1
Median nTPM: 49.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 169.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 126.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 119.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 105.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 100.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 96.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 95.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 95.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 94.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 92.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 88.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 87.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 84.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 81.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 78.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 77.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 77.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 76.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 75.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 74.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 74.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 73.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 72.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 72.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 71.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 70.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 70.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 70.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 68.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 68.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 67.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 67.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 66.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 65.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 64.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 64.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 64.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 64.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 63.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 63.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 63.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 62.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 62.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 60.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 60.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 59.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 59.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 58.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 58.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 58.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 58.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 58.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 58.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 57.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 56.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 56.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 55.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 55.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 54.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 54.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 54.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 54.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 54.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 53.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 53.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 53.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 53.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 53.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 52.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 52.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 52.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 52.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 51.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 51.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 51.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 51.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 50.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 49.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 49.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 49.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 49.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 49.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 48.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 47.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 47.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 47.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 47.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 47.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 46.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 46.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 46.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 46.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 46.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 46.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 46.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 45.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 45.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 44.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 44.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 44.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 44.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 43.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 43.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 43.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 42.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 42.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 42.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 42.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 42.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 42.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 42.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 42.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 41.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 41.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 41.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 40.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 39.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 39.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 39.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 38.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 38.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 38.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 37.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 37.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 36.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 36.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 36.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 35.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 35.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 35.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 35.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 34.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 34.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 33.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 33.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 32.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 32.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 30.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 30.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 29.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 29.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 29.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 27.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 26.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 26.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 25.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 25.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 24.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 24.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 23.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 23.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 22.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 20.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 19.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 17.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 15.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 13.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 9.7
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