BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.3 nTPM
HPA:39.3 nTPM
GTEx:42.4 nTPM
FANTOM5:105.0 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:74.7 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035826
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.5
2481 Female, age 94, left hemisphere 42.6
1857 Female, age 85, left hemisphere 38.1
1854 Male, age 80, left hemisphere 37.9
2288 Male, age 75, left hemisphere 37.4
2846 Female, age 79, unknown 36.8
2290 Female, age 72, unknown 36.1
1781 Male, age 74, unknown 35.9
2289 Male, age 61, right hemisphere 35.2
Claustrum
nTPM: 35.8
1956 Male, age 74, unknown 37.1
2491 Male, age 75, both hemispheres 37.1
2198 Male, age 80, both hemispheres 36.9
2196 Female, age 79, unknown 36.6
2392 Female, age 94, both hemispheres 36.6
2292 Female, age 85, both hemispheres 35.8
2568 Male, age 61, both hemispheres 35.1
2284 Female, age 91, both hemispheres 34.0
2645 Female, age 72, unknown 33.4
Globus pallidus, externus
nTPM: 37.7
2772 Female, age 79, unknown 41.4
1996 Male, age 80, right hemisphere 38.4
2395 Male, age 75, both hemispheres 37.2
2567 Female, age 72, unknown 36.3
2646 Male, age 61, right hemisphere 35.1
Globus pallidus, internus
nTPM: 39.3
2778 Female, age 91, both hemispheres 42.2
2037 Male, age 80, right hemisphere 40.6
2287 Male, age 75, right hemisphere 40.3
1818 Male, age 74, unknown 39.4
2566 Female, age 72, unknown 38.4
2111 Female, age 85, right hemisphere 37.2
2483 Female, age 94, right hemisphere 37.0
Nucleus accumbens
nTPM: 37.7
2391 Female, age 94, left hemisphere 41.2
2286 Male, age 75, left hemisphere 39.8
1856 Female, age 91, right hemisphere 38.6
2698 Female, age 72, unknown 37.7
1806 Female, age 85, left hemisphere 36.7
2824 Male, age 61, right hemisphere 36.5
2732 Male, age 80, right hemisphere 35.6
1783 Male, age 74, unknown 35.4
Nucleus basalis of Meynert
nTPM: 37.3
2821 Male, age 75, both hemispheres 40.0
2393 Male, age 80, right hemisphere 37.1
2484 Female, age 94, left hemisphere 37.0
2569 Male, age 61, both hemispheres 35.3
Nucleus of the diagonal band
nTPM: 37.8
1812 Female, age 91, both hemispheres 39.2
2775 Male, age 80, right hemisphere 39.1
1979 Male, age 74, unknown 37.6
2195 Female, age 85, both hemispheres 37.0
2029 Male, age 61, right hemisphere 36.0
Olfactory tubercle
nTPM: 36.6
2856 Male, age 75, right hemisphere 38.3
1846 Male, age 80, right hemisphere 37.3
1998 Female, age 91, both hemispheres 36.1
2487 Female, age 94, left hemisphere 34.6
Putamen
nTPM: 36.9
2482 Female, age 94, left hemisphere 42.4
1937 Female, age 91, right hemisphere 37.4
1829 Male, age 74, unknown 36.6
2466 Female, age 79, unknown 36.6
2647 Male, age 75, left hemisphere 35.8
1838 Male, age 80, right hemisphere 35.5
2489 Female, age 72, unknown 33.9
Septal nuclei
nTPM: 36.7
2629 Female, age 94, right hemisphere 39.3
1960 Male, age 74, unknown 37.8
2009 Female, age 91, both hemispheres 37.8
2031 Female, age 72, unknown 36.8
2394 Male, age 61, left hemisphere 36.3
2199 Male, age 80, right hemisphere 35.9
2059 Female, age 85, both hemispheres 33.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.7
Samples: 246

Max nTPM: 77.9
Min nTPM: 23.0
Std nTPM: 8.4
Median nTPM: 38.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 77.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 77.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 72.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 69.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 64.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 61.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 57.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 56.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 56.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 55.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 55.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.6
Samples: 246

Max nTPM: 95.1
Min nTPM: 24.7
Std nTPM: 9.2
Median nTPM: 40.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 95.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 83.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 67.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 64.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 63.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 62.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 62.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 61.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 60.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 60.5
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 58.7
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Brain - Putamen (basal ganglia)
Average nTPM: 42.4
Samples: 205

Max nTPM: 81.2
Min nTPM: 28.2
Std nTPM: 8.0
Median nTPM: 41.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 81.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 70.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 63.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 62.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 60.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 59.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 58.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 56.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 56.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 55.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 55.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 74.7
FF:10164-103B2 76 years, female 74.7
Globus pallidus
Scaled Tags Per Million: 105.0
FF:10175-103C4 60 years, female 142.0
FF:10161-103A8 76 years, female 67.9
Nucleus accumbens
Scaled Tags Per Million: 52.3
FF:10037-101F1 23-56 years, mixed 52.3
Putamen
Scaled Tags Per Million: 77.2
FF:10176-103C5 60 years, female 77.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Caudate
nTPM: 22.4
Samples: 4

Max nTPM: 24.1
Min nTPM: 20.8
Sample A Female 23.7
Sample B Female 21.1
Sample C Male 20.8
Sample D Male 24.1
Putamen
nTPM: 22.3
Samples: 4

Max nTPM: 24.8
Min nTPM: 20.6
Sample A Female 22.5
Sample B Female 24.8
Sample C Male 20.6
Sample D Male 21.4
Septum
nTPM: 21.1
Samples: 4

Max nTPM: 21.7
Min nTPM: 19.9
Sample A Female 21.3
Sample B Female 21.6
Sample C Male 19.9
Sample D Male 21.7
Ventral pallidum
nTPM: 22.2
Samples: 4

Max nTPM: 26.3
Min nTPM: 19.9
Sample A Female 26.3
Sample B Female 19.9
Sample C Male 20.9
Sample D Male 21.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 74.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.9
Samples: 4

Max nTPM: 69.6
Min nTPM: 59.4
Sample A Male 65.0
Sample B Male 69.6
Sample C Female 59.4
Sample D Female 65.7
Septum
nTPM: 74.7
Samples: 4

Max nTPM: 82.5
Min nTPM: 69.1
Sample A Male 71.2
Sample B Male 76.0
Sample C Female 82.5
Sample D Female 69.1
Ventral forebrain
nTPM: 73.9
Samples: 4

Max nTPM: 77.4
Min nTPM: 71.6
Sample A Male 71.8
Sample B Male 74.9
Sample C Female 77.4
Sample D Female 71.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68076991 Antisense, RP_040929_01_C04, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
68076991 Antisense, RP_040929_01_C04, Mouse strain C57BL/6J (56 days, male) 0.1

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