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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:85.3 nTPM
GTEx:99.9 nTPM
FANTOM5:108.0 Scaled Tags Per Million
Pig:39.8 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 85.3
Sample id Sample description nTPM
Putamen
nTPM: 85.3
1838 Male, age 80, right hemisphere 95.7
1937 Female, age 91, right hemisphere 91.6
2466 Female, age 79, unknown 88.8
2482 Female, age 94, left hemisphere 88.1
1829 Male, age 74, unknown 85.1
2647 Male, age 75, left hemisphere 79.1
2489 Female, age 72, unknown 68.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 99.9
Samples: 205

Max nTPM: 191.8
Min nTPM: 46.3
Std nTPM: 26.7
Median nTPM: 97.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 191.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 186.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 184.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 170.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 161.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 153.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 150.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 148.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 147.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 144.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 144.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 142.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 141.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 140.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 139.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 138.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 138.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 138.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 137.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 136.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 136.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 134.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 134.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 134.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 133.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 133.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 132.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 129.2
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 128.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 128.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 128.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 127.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 126.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 126.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 126.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 125.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 125.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 124.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 124.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 123.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 123.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 123.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 122.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 122.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 121.9
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 121.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 120.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 120.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 120.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 118.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 117.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 117.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 117.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 115.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 114.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 113.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 113.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 113.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 113.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 113.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 112.9
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 112.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 112.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 112.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 111.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 111.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 111.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 110.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 110.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 110.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 109.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 108.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 106.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 106.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 105.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 105.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 105.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 104.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 104.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 103.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 103.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 103.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 103.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 102.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 102.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 101.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 101.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 101.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 100.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 100.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 100.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 99.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 99.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 99.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 99.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 98.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 98.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 97.6
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 97.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 97.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 97.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 97.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 97.1
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 97.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 96.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 95.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 95.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 95.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 94.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 94.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 94.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 94.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 93.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 93.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 92.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 92.8
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 92.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 92.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 91.6
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 91.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 91.0
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 90.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 90.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 90.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 90.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 90.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 89.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 88.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 88.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 88.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 88.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 87.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 86.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 86.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 86.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 86.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 86.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 85.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 85.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 85.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 85.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 84.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 84.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 83.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 83.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 83.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 83.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 83.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 82.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 82.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 82.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 81.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 80.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 79.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 79.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 79.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 78.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 78.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 77.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 77.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 77.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 77.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 77.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 77.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 77.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 77.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 77.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 77.1
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 76.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 76.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 75.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 75.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 75.0
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 74.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 72.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 72.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 71.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 69.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 69.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 69.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 68.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 67.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 67.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 66.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 66.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 65.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 65.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 65.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 64.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 64.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 64.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 63.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 63.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 62.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 62.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 62.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 61.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 60.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 59.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 59.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 58.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 56.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 53.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 47.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 46.3
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 108.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 108.0
FF:10176-103C5 60 years, female 108.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.8
Pig sample Sample description nTPM
Putamen
nTPM: 39.8
Samples: 4

Max nTPM: 58.1
Min nTPM: 27.8
Sample A Female 42.4
Sample B Female 27.8
Sample C Male 58.1
Sample D Male 30.8

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